Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G193900.1 | Wheat | cytosol | 98.04 | 98.04 |
| TraesCS1B01G208900.1 | Wheat | cytosol | 97.06 | 97.06 |
| HORVU1Hr1G050750.1 | Barley | cytosol, mitochondrion, plasma membrane | 49.02 | 90.91 |
| Os10t0575950-01 | Rice | cytosol | 82.35 | 84.85 |
| Zm00001d030079_P001 | Maize | cytosol, nucleus, plastid | 74.51 | 83.52 |
| OQU80353 | Sorghum | cytosol | 67.65 | 71.13 |
| EER94435 | Sorghum | cytosol | 82.35 | 69.42 |
| KXG34154 | Sorghum | cytosol | 28.43 | 52.73 |
| GSMUA_Achr5P14060_001 | Banana | nucleus | 55.88 | 51.35 |
| VIT_05s0124g00450.t01 | Wine grape | plastid | 39.22 | 45.98 |
| Bra040769.1-P | Field mustard | cytosol | 44.12 | 45.45 |
| AT1G32310.1 | Thale cress | cytosol | 44.12 | 45.0 |
| CDY61823 | Canola | cytosol | 44.12 | 41.28 |
| CDY32305 | Canola | cytosol | 44.12 | 41.28 |
| OQU76519 | Sorghum | extracellular | 57.84 | 41.26 |
| PGSC0003DMT400038358 | Potato | plastid | 41.18 | 39.25 |
| Solyc08g076580.2.1 | Tomato | cytosol | 43.14 | 38.94 |
| KRH39569 | Soybean | cytosol, plastid | 41.18 | 37.5 |
| KRH74384 | Soybean | cytosol, plastid | 39.22 | 35.09 |
| KXG30734 | Sorghum | extracellular | 51.96 | 33.33 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G197800.1 | EnsemblPlantsGene:TraesCS1D01G197800 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0007049 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009555 | GO:GO:0009556 |
| GO:GO:0009987 | GO:GO:0010997 | GO:GO:0019538 | GO:GO:0040007 | GO:GO:0045732 | GO:GO:0046621 |
| InterPro:SAMBA | ncoils:Coil | PANTHER:PTHR37387 | SEG:seg | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr1D:-:279098403..279098959
Molecular Weight (calculated)
10944.9 Da
IEP (calculated)
6.693
GRAVY (calculated)
-0.417
Length
102 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSPARSTVS AASAGGAIAI SAADDLADSI DALYRKDEAM AELKSEVMEA LQKEVRSLDD NSWMFAAPRS RINLISRPGG YLPKQQGKIA ELDQASKKTR
101: NC
101: NC
1: MNGASPAHSL VSTTAVAGGG GSSGAAAGLD DFHFPPDIPS MQERKDEAMR VLKADLMTEL DKEVKSLEED SWMFEGPRSR IHLISRRGNF LKKGGEVKLW
Arabidopsis Description
SAMBAProtein SAMBA [Source:UniProtKB/Swiss-Prot;Acc:Q9C613]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.