Factsheet for TraesCS6B01G402400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G350100.1	Wheat	plastid	82.42	89.22
TraesCS6A01G367100.1	Wheat	plastid	82.84	87.08
HORVU6Hr1G086970.1	Barley	plastid	81.78	86.16
Os02t0800000-01	Rice	plastid	77.97	82.33
KXG31288	Sorghum	plastid	77.12	80.35
Zm00001d018401_P001	Maize	plastid	73.52	79.04
AT1G80480.1	Thale cress	plastid	63.14	67.12
PGSC0003DMT400036661	Potato	plastid	63.98	66.52
Solyc03g117430.2.1	Tomato	plastid	64.19	66.01
KRH36213	Soybean	nucleus	62.29	65.92
VIT_09s0002g08260.t01	Wine grape	plastid	63.14	65.49
AT1G15730.1	Thale cress	plastid	62.08	65.4
GSMUA_Achr7P20870_001	Banana	plastid	63.14	65.21
CDY36582	Canola	plastid	61.02	65.16
CDY33389	Canola	plastid	60.81	64.21
Bra026114.1-P	Field mustard	plastid	60.59	63.84
Bra008470.1-P	Field mustard	plastid	61.44	63.74
CDY38672	Canola	plastid	61.23	63.38
KRG92963	Soybean	nucleus	62.29	63.09
CDY72248	Canola	plastid	41.1	61.78
VIT_09s0002g08230.t01	Wine grape	cytosol	20.13	58.28
TraesCS2B01G207100.2	Wheat	cytosol	24.36	31.59

Protein Annotations

EnsemblPlants:TraesCS6B01G402400.1	EnsemblPlantsGene:TraesCS6B01G402400	Gene3D:3.30.1220.10	Gene3D:3.40.50.300	InterPro:Cbl_biosynth_CobW-like_C	InterPro:CobW-likC_sf
InterPro:CobW/HypB/UreG_dom	InterPro:IPR036627	InterPro:P-loop_NTPase	PANTHER:PTHR13748	PANTHER:PTHR13748:SF43	PFAM:PF02492
PFAM:PF07683	SEG:seg	SMART:SM00833	SUPFAM:SSF52540	SUPFAM:SSF90002	MapMan:15.6.1.2.3.7

Description

No Description!

Coordinates

chr6B:+:678661021..678665842

Molecular Weight (calculated)

52279.1 Da

IEP (calculated)

6.606

GRAVY (calculated)

-0.390

Length

472 amino acids

Sequence
(BLAST)

001: MGAPPRTRTI GPSHNIHLRY PAPRSPHPAA MAALCSAASP AVARAAALGL SARGPASLLP LRLRIRAASR SCHAAPRIAA SWRARRRFAA SAASTTEEGA
101: DVDTMIPPDN RIPATIITGF LGSGKTTLLN HILTSHHGKR IAVIENEYGE VDIDGSLVAA QTAGAEDIMM LNNGCLCCTV RGDLVRMIGE LVDKKKGKFD
201: HLVIETTGLA NPAPIIQTFY AEDTVFNDVK LDGVVTLVDS KHARLHLDEV KPKGIVNEAV QQIAYADRII INKTDLVSEP EVSSLVERIR SINRMANLKR
301: AQYGKVDLDY VLGIGGFDLE RIESAVTEEP HDEHEHEHEH KHEHDHDHAH DHDHHHHDHD HKHDHHAHDH THDPGVSSVS IVCEGEMDLE KADMWLGNLL
401: LERSDDIYRM KGLLSVSGMP QRFVFQGVHD IFQGSPDRMW EPNEPRINKI VFIGRNLNRE ELETGFKDCL LK

Best Arabidopsis Sequence Match ( AT1G80480.1 )
(BLAST)

001: MATLSTLEIA TTFLSFTAPR SSAAFNYRFS SAAVSVLSRP RATTVSVRTT PSFFYSPVVR RQRFSSVSAS ATQTEDSDVT TKIPPDNRIP ATIITGFLGS
101: GKTTLLNHIL TRDHGKRIAV IENEFGEVDI DGSLVASKSI GAEDIVMLNN GCLCCTVRGD LVRMIGELVN TKKGKFDHIV IETTGLANPA PIIQTFYAEE
201: EIFNDVKLDG VVTLVDAKHA RLHLDEVKPE GVVNEAVEQI AYADRIIVNK TDLVGEAELG SVVQRIKTIN SMAQMTRTKY GNVDLDYVLG IGGFDLERIE
301: SSVNEDDKGD HHDHDHDHHH DHNHDHDHHH HDGHDHHHHS HDHTHDPGVS SVSIVCEGSL DLEKANMWLG TLLMERSEDI YRMKGLLSVH TMEERFVFQG
401: VHDIFQGSPD RLWGREEERV NKIVFIGKNL NREELEKGFK ACLI

Arabidopsis Description

PTAC17At1g80480 [Source:UniProtKB/TrEMBL;Acc:Q9M8L6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.