CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008470.1-P	Field mustard	plastid	96.93	97.14
CDY72248	Canola	plastid	57.02	82.8
AT1G80480.1	Thale cress	plastid	77.63	79.73
CDY36582	Canola	plastid	71.27	73.53
CDY33389	Canola	plastid	71.05	72.48
VIT_09s0002g08260.t01	Wine grape	plastid	71.27	71.43
KRH36213	Soybean	nucleus	67.98	69.51
PGSC0003DMT400036661	Potato	plastid	67.11	67.4
TraesCS6D01G350100.1	Wheat	plastid	64.04	66.97
GSMUA_Achr7P20870_001	Banana	plastid	67.11	66.96
Solyc03g117430.2.1	Tomato	plastid	66.67	66.23
KRG92963	Soybean	nucleus	67.11	65.67
Os02t0800000-01	Rice	plastid	63.6	64.88
HORVU6Hr1G086970.1	Barley	plastid	63.6	64.73
TraesCS6A01G367100.1	Wheat	plastid	63.6	64.59
KXG31288	Sorghum	plastid	64.04	64.46
Zm00001d018401_P001	Maize	plastid	60.53	62.87
TraesCS6B01G402400.1	Wheat	plastid	63.38	61.23
VIT_09s0002g08230.t01	Wine grape	cytosol	20.61	57.67
CDY16163	Canola	cytosol	27.41	34.44
CDX85025	Canola	cytosol	27.63	34.43

Protein Annotations

EnsemblPlants:CDY38672	EnsemblPlantsGene:GSBRNA2T00066398001	Gene3D:3.30.1220.10	Gene3D:3.40.50.300	InterPro:Cbl_biosynth_CobW-like_C	InterPro:CobW-likC_sf
InterPro:CobW/HypB/UreG_dom	InterPro:IPR036627	InterPro:P-loop_NTPase	PANTHER:PTHR13748	PANTHER:PTHR13748:SF43	PFAM:PF02492
PFAM:PF07683	ProteinID:CDY38672	ProteinID:CDY38672.1	SEG:seg	SMART:SM00833	SUPFAM:SSF52540
SUPFAM:SSF90002	UniParc:UPI0004EDB7AD	UniProt:A0A078HLB8	MapMan:15.6.1.2.3.7	:	:

Description

BnaC02g23070DBnaC02g23070D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HLB8]

Coordinates

chrLK032429:-:176258..178729

Molecular Weight (calculated)

50598.0 Da

IEP (calculated)

6.328

GRAVY (calculated)

-0.326

Length

456 amino acids

Sequence
(BLAST)

001: MATLSKLEMA TTFLAFTSPR SATALNYRFS SAAVPIFSRR IAKPVSVRAK PSLLYPPVVN SNRLRKFSSV SASASASAPP QTDDSDVTTT KIPPDNRIPA
101: TIITGFLGSG KTTLLNHILT RDHGKRIAVI ENEFGEVDID GSLVASKSVG AEDIVMLNNG CLCCTVRGDL VRMISELVNK KKGKFDHIVI ETTGLANPAP
201: IIQTFYAEDE IFSDVKLDGV VTLVDAKHAR LHLDEVKPKG VVNEAVEQIA YADRIIVNKT DLVGESELGS VVQRIKTINS MAQMTMTNYG NVDLDYVLGI
301: GGFDLERIES SVTTEDDKKG HNECHDEHHH DHDHHHHDHH HHNEHEHNHS HDHDHTHDPG VSSVSIVCEG SLDLDKANMW LGTLLMERSE DIYRMKGLLS
401: VHTMEERFVF QGVHDIFQGS PDRLWGNDEA RVNKMVFIGK NLNREELEKG FKACLI

Best Arabidopsis Sequence Match ( AT1G80480.1 )
(BLAST)

001: MATLSTLEIA TTFLSFTAPR SSAAFNYRFS SAAVSVLSRP RATTVSVRTT PSFFYSPVVR RQRFSSVSAS ATQTEDSDVT TKIPPDNRIP ATIITGFLGS
101: GKTTLLNHIL TRDHGKRIAV IENEFGEVDI DGSLVASKSI GAEDIVMLNN GCLCCTVRGD LVRMIGELVN TKKGKFDHIV IETTGLANPA PIIQTFYAEE
201: EIFNDVKLDG VVTLVDAKHA RLHLDEVKPE GVVNEAVEQI AYADRIIVNK TDLVGEAELG SVVQRIKTIN SMAQMTRTKY GNVDLDYVLG IGGFDLERIE
301: SSVNEDDKGD HHDHDHDHHH DHNHDHDHHH HDGHDHHHHS HDHTHDPGVS SVSIVCEGSL DLEKANMWLG TLLMERSEDI YRMKGLLSVH TMEERFVFQG
401: VHDIFQGSPD RLWGREEERV NKIVFIGKNL NREELEKGFK ACLI

Arabidopsis Description

PTAC17At1g80480 [Source:UniProtKB/TrEMBL;Acc:Q9M8L6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.