Factsheet for GSMUA_Achr7P20870_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g08260.t01	Wine grape	plastid	72.65	72.97
PGSC0003DMT400036661	Potato	plastid	71.99	72.47
Solyc03g117430.2.1	Tomato	plastid	71.99	71.68
AT1G80480.1	Thale cress	plastid	67.83	69.82
Os02t0800000-01	Rice	plastid	67.61	69.13
KRH36213	Soybean	nucleus	66.74	68.39
TraesCS6D01G350100.1	Wheat	plastid	65.21	68.35
HORVU6Hr1G086970.1	Barley	plastid	66.08	67.41
TraesCS6A01G367100.1	Wheat	plastid	66.08	67.26
Bra008470.1-P	Field mustard	plastid	66.96	67.25
CDY38672	Canola	plastid	66.96	67.11
KXG31288	Sorghum	plastid	66.08	66.67
CDY36582	Canola	plastid	64.33	66.52
Zm00001d018401_P001	Maize	plastid	63.46	66.06
CDY33389	Canola	plastid	64.55	66.0
AT1G15730.1	Thale cress	plastid	64.55	65.85
Bra026114.1-P	Field mustard	plastid	63.9	65.18
KRG92963	Soybean	nucleus	65.86	64.59
CDY72248	Canola	plastid	43.98	64.01
TraesCS6B01G402400.1	Wheat	plastid	65.21	63.14
VIT_09s0002g08230.t01	Wine grape	cytosol	20.79	58.28
GSMUA_Achr6P01320_001	Banana	mitochondrion	47.26	49.77
GSMUA_Achr6P24600_001	Banana	cytosol	24.95	30.81
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, peroxisome, plastid	15.75	14.97

Protein Annotations

EnsemblPlants:GSMUA_Achr7P20870_001	EnsemblPlants:GSMUA_Achr7T20870_001	EnsemblPlantsGene:GSMUA_Achr7G20870_001	Gene3D:3.30.1220.10	Gene3D:3.40.50.300	InterPro:Cbl_biosynth_CobW-like_C
InterPro:CobW-likC_sf	InterPro:CobW/HypB/UreG_dom	InterPro:IPR036627	InterPro:P-loop_NTPase	PANTHER:PTHR13748	PANTHER:PTHR13748:SF43
PFAM:PF02492	PFAM:PF07683	SEG:seg	SMART:SM00833	SUPFAM:SSF52540	SUPFAM:SSF90002
UniParc:UPI00029696E6	UniProt:M0TJC4	MapMan:15.6.1.2.3.7	:	:	:

Description

Putative COBW domain-containing protein 1 [Source:GMGC_GENE;Acc:GSMUA_Achr7G20870_001]

Coordinates

chr7:-:23837389..23843902

Molecular Weight (calculated)

50129.4 Da

IEP (calculated)

6.402

GRAVY (calculated)

-0.216

Length

457 amino acids

Sequence
(BLAST)

001: MAAVSSDLAT AFFGLARRHT AVAFNLRASI LAVARRRTPV SICARAYAVG AKPAVVAGPG RLAISTRSRA HARRFAASAA ATDEGSDLLT KIPPDDRIPA
101: TIITGFLGSG KTTLLNHILT ADHGKRIAVI ENEYGEVDID GSLVAAKAAG AEDIIMLNNG CLCCTVRGDL VRMISELVSK KKGNFDHIVI ETTGLANPAP
201: IIQTFYAEDQ IFNDVKLDGV VTLVDAKHAG FHLDEKKPRG VVNEAVEQIA YADRIIVNKI DLVGESDVSS LIQRIKNINS MAYLKRAEYG KVDLDYVLGV
301: GGFDLERIES VVNAEASTED HDHDHDHHDH HHHDHHHHDE HDHEHEHHSH SHAHDHTHDP GVSSVSIVCE GNLDLNKANM WLGTLLIERS DDIYRMKGLL
401: SVDGMHERFV FQGVHDIFQG SPDRLWGAEE PRVNKIVFIG KNLNAEELEK GFKSCLL

Best Arabidopsis Sequence Match ( AT1G80480.1 )
(BLAST)

001: MATLSTLEIA TTFLSFTAPR SSAAFNYRFS SAAVSVLSRP RATTVSVRTT PSFFYSPVVR RQRFSSVSAS ATQTEDSDVT TKIPPDNRIP ATIITGFLGS
101: GKTTLLNHIL TRDHGKRIAV IENEFGEVDI DGSLVASKSI GAEDIVMLNN GCLCCTVRGD LVRMIGELVN TKKGKFDHIV IETTGLANPA PIIQTFYAEE
201: EIFNDVKLDG VVTLVDAKHA RLHLDEVKPE GVVNEAVEQI AYADRIIVNK TDLVGEAELG SVVQRIKTIN SMAQMTRTKY GNVDLDYVLG IGGFDLERIE
301: SSVNEDDKGD HHDHDHDHHH DHNHDHDHHH HDGHDHHHHS HDHTHDPGVS SVSIVCEGSL DLEKANMWLG TLLMERSEDI YRMKGLLSVH TMEERFVFQG
401: VHDIFQGSPD RLWGREEERV NKIVFIGKNL NREELEKGFK ACLI

Arabidopsis Description

PTAC17At1g80480 [Source:UniProtKB/TrEMBL;Acc:Q9M8L6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.