CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33389	Canola	plastid	94.34	93.29
Bra026114.1-P	Field mustard	plastid	91.18	89.96
AT1G15730.1	Thale cress	plastid	83.26	82.14
CDY72248	Canola	plastid	51.81	72.93
CDY38672	Canola	plastid	73.53	71.27
VIT_09s0002g08260.t01	Wine grape	plastid	70.14	68.13
KRH36213	Soybean	nucleus	66.06	65.47
PGSC0003DMT400036661	Potato	plastid	66.97	65.2
TraesCS6D01G350100.1	Wheat	plastid	64.03	64.91
Solyc03g117430.2.1	Tomato	plastid	66.97	64.49
Os02t0800000-01	Rice	plastid	65.16	64.43
GSMUA_Achr7P20870_001	Banana	plastid	66.52	64.33
KXG31288	Sorghum	plastid	65.61	64.02
TraesCS6A01G367100.1	Wheat	plastid	64.93	63.92
HORVU6Hr1G086970.1	Barley	plastid	64.25	63.39
KRG92963	Soybean	nucleus	65.84	62.45
Zm00001d018401_P001	Maize	plastid	61.76	62.19
TraesCS6B01G402400.1	Wheat	plastid	65.16	61.02
VIT_09s0002g08230.t01	Wine grape	cytosol	21.27	57.67
CDY16163	Canola	cytosol	29.19	35.54
CDX85025	Canola	cytosol	29.19	35.25

Protein Annotations

EnsemblPlants:CDY36582	EnsemblPlantsGene:GSBRNA2T00062273001	Gene3D:3.30.1220.10	Gene3D:3.40.50.300	InterPro:Cbl_biosynth_CobW-like_C	InterPro:CobW-likC_sf
InterPro:CobW/HypB/UreG_dom	InterPro:IPR036627	InterPro:P-loop_NTPase	PANTHER:PTHR13748	PANTHER:PTHR13748:SF43	PFAM:PF02492
PFAM:PF07683	ProteinID:CDY36582	ProteinID:CDY36582.1	SEG:seg	SMART:SM00833	SUPFAM:SSF52540
SUPFAM:SSF90002	UniParc:UPI0004EDACFE	UniProt:A0A078HFK5	MapMan:15.6.1.2.3.7	:	:

Description

BnaA06g10350DBnaA06g10350D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HFK5]

Coordinates

chrLK032378:-:279149..282095

Molecular Weight (calculated)

49405.1 Da

IEP (calculated)

5.316

GRAVY (calculated)

-0.401

Length

442 amino acids

Sequence
(BLAST)

001: MATLLRLDTS TTFLAFTSPR AGSALNHRFA SATRSRASVS VRTKTSPFYS DNRRKSFSAS ASATSLAVVE TEDPFDVPTE LTPDNRIPAT IITGFLGSGK
101: TTLLNHILTG DHGKRIAVIE NEFGEVDIDG SLVAAKTAGA EDIILLNNGC LCCTVRGDLV RMISELVSKK KGRFDHIVIE TTGLANPAPI IQTFYAEDDI
201: FNDVKLDGVV TLVDAKHARL HLDEVKPDGF VNEAVEQIAY ADRIIVNKTD LVGEEELDSV MQRIKTINSM AHMKRTKYGK VDLDYVLGIG GFDLERIENS
301: VNEEEKEDHD DHHHDHDHGR DCHDHHKEHD HEHGHHDSHD HTHDPGVSSV SLVCEGDLDL EKANMWLGAL LFQRSEDIYR MKGILSVQDM EERFVFQGVH
401: EIFEGSPDRL WQKDETRTSK IVFIGKNLNR EELEMGFRAC LV

Best Arabidopsis Sequence Match ( AT1G15730.1 )
(BLAST)

001: MATLLKLDIA TTFLAFIVPR ANTSLNHRFA SARLSTATVS LRTKSSSFYS AALYSDSRRR FHSAVASDSS LAVVDDEDIF DVASEILPDN RIPATIITGF
101: LGSGKTTLLN HILTGDHGKR IAVIENEFGE VDIDGSLVAA QTAGAEDIMM LNNGCLCCTV RGDLVRMISE MVQTKKGRFD HIVIETTGLA NPAPIIQTFY
201: AEDEIFNDVK LDGVVTLVDA KHARLHLDEV KPEGYVNEAV EQIAYADRII VNKTDLVGEP ELASVMQRIK TINSMAHMKR TKYGKVDLDY VLGIGGFDLE
301: RIESSVNEEE KEDREGHDDH HHGHDCHDHH NEHEHEHEHE HHHSHDHTHD PGVGSVSIVC EGDLDLEKAN MWLGALLYQR SEDIYRMKGI LSVQDMDERF
401: VFQGVHEIFE GSPDRLWRKD ETRTNKIVFI GKNLNREELE MGFRACLI

Arabidopsis Description

At1g15730/F7H2_7 [Source:UniProtKB/TrEMBL;Acc:Q9LMR1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.