CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024711.1-P	Field mustard	cytosol	95.08	95.87
CDY16163	Canola	cytosol	94.54	95.32
AT1G26520.1	Thale cress	cytosol	89.62	87.7
KRH75019	Soybean	cytosol	71.86	72.05
PGSC0003DMT400072954	Potato	cytosol	70.22	69.27
Solyc05g012460.2.1	Tomato	cytosol	69.67	68.73
GSMUA_Achr6P24600_001	Banana	cytosol	66.67	65.95
HORVU2Hr1G033960.2	Barley	cytosol	63.93	64.29
KXG36628	Sorghum	cytosol	63.66	64.19
KRH70873	Soybean	cytosol	52.19	64.09
Os07t0598900-01	Rice	cytosol	63.39	63.74
TraesCS2B01G207100.2	Wheat	cytosol	63.11	63.46
TraesCS2D01G188500.1	Wheat	cytosol	63.11	63.11
TraesCS2A01G179800.1	Wheat	cytosol	63.11	62.94
Zm00001d022048_P002	Maize	cytosol	61.48	57.54
CDY36582	Canola	plastid	35.25	29.19
CDY72248	Canola	plastid	24.86	28.98
CDY33389	Canola	plastid	34.97	28.64
CDY38672	Canola	plastid	34.43	27.63

Protein Annotations

EnsemblPlants:CDX85025	EnsemblPlantsGene:GSBRNA2T00142460001	Gene3D:3.30.1220.10	Gene3D:3.40.50.300	InterPro:Cbl_biosynth_CobW-like_C	InterPro:CobW-likC_sf
InterPro:CobW/HypB/UreG_dom	InterPro:IPR036627	InterPro:P-loop_NTPase	PANTHER:PTHR13748	PANTHER:PTHR13748:SF31	PFAM:PF02492
PFAM:PF07683	ProteinID:CDX85025	ProteinID:CDX85025.1	SMART:SM00833	SUPFAM:SSF52540	SUPFAM:SSF90002
UniParc:UPI0004EE58B1	MapMan:35.2	:	:	:	:

Description

BnaC05g20300D

Coordinates

chrLK031839:-:1578576..1580689

Molecular Weight (calculated)

40935.9 Da

IEP (calculated)

4.446

GRAVY (calculated)

-0.191

Length

366 amino acids

Sequence
(BLAST)

001: MGDDEEAPMA VQIQPDIPVG KTLSAEESSD AVSVGVTVIT GYLGAGKSTL VNYILNGKHG KKIAVILNEF GEEIGVERAM INEGEGGALV EEWVELANGC
101: ICCTVKHSLV QALEQLVQRK DRLDHILLET TGLANPAPLA SILWLDDQLE SEVKLDCIVT VVDAKNLRFQ LNERRDSSSF PEAFNQIAFA DTVIMNKVDL
201: ISQEESDELE KEIHSINSLA NVIRSVRCQV DLSNIFDCQA YDSTHVSRLE SLLEANKSLT TTDLHDSGVR TLCINEPQPI NLDKVRLWLE EILWDKKLDM
301: DVYRCKAVLN IQNSDQMHIL QAVKEIYEIV PARKWSDEEN RVNKIVFIGH KLDEEALKTG LRECRP

Best Arabidopsis Sequence Match ( AT1G26520.1 )
(BLAST)

001: MLKEEAEGVK MEDDDEEPPM AVQIHPDVSV GKVHSSSDTV SVGVSVITGY LGAGKSTLVN YILNGKHGKR IAVILNEFGE EIGVERAMIN EGEEGAIVEE
101: WVELANGCVC CTVKHSLVQA LEQLVQRKDR LDHILLETTG LANPAPLASI LWLDDQLESE VKLDCIVTVV DAKNLRFQLN ERRDSSSFPE AFNQIAFADT
201: IIMNKVDLIS QEESDELEKE IHSINSLANV IRSVRCQVDL SNILNCQAYD STHVSRLESL LEANKSLTTT DLHDSGVRTL CISEPQPINL DKVRLWLEEI
301: LWDKKSEMDV YRCKAVLSIQ NSDQMHILQA VRDIYEIVPA RKWSEEENRT NKIVFIGHKL DEEVLRSGLR DCRP

Arabidopsis Description

At1g26520 [Source:UniProtKB/TrEMBL;Acc:Q500W8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.