Factsheet for Zm00001d022048_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG36628	Sorghum	cytosol	85.42	92.01
HORVU2Hr1G033960.2	Barley	cytosol	75.96	81.59
Os07t0598900-01	Rice	cytosol	75.7	81.32
TraesCS2A01G179800.1	Wheat	cytosol	76.21	81.2
TraesCS2D01G188500.1	Wheat	cytosol	75.7	80.87
TraesCS2B01G207100.2	Wheat	cytosol	74.68	80.22
GSMUA_Achr6P24600_001	Banana	cytosol	63.43	67.03
CDY16163	Canola	cytosol	57.54	61.98
PGSC0003DMT400072954	Potato	cytosol	58.57	61.73
Bra024711.1-P	Field mustard	cytosol	57.29	61.71
KRH75019	Soybean	cytosol	57.54	61.64
CDX85025	Canola	cytosol	57.54	61.48
AT1G26520.1	Thale cress	cytosol	58.57	61.23
Solyc05g012460.2.1	Tomato	cytosol	58.06	61.19
KRH70873	Soybean	cytosol	42.71	56.04
Zm00001d018401_P001	Maize	plastid	29.41	26.2

Protein Annotations

EnsemblPlants:Zm00001d022048_P002	EnsemblPlants:Zm00001d022048_T002	EnsemblPlantsGene:Zm00001d022048	EntrezGene:100216864	Gene3D:3.30.1220.10	Gene3D:3.40.50.300
InterPro:Cbl_biosynth_CobW-like_C	InterPro:CobW-likC_sf	InterPro:CobW/HypB/UreG_dom	InterPro:IPR036627	InterPro:P-loop_NTPase	ncoils:Coil
PANTHER:PTHR13748	PANTHER:PTHR13748:SF31	PFAM:PF02492	PFAM:PF07683	ProteinID:ONM59418.1	SEG:seg
SUPFAM:SSF52540	SUPFAM:SSF90002	UniParc:UPI0008438F02	UniProt:A0A1D6IIX4	MapMan:35.2	:

Description

Cobalamin biosynthesis CobW-like protein

Coordinates

chr7:+:168849928..168860729

Molecular Weight (calculated)

44025.7 Da

IEP (calculated)

4.652

GRAVY (calculated)

-0.083

Length

391 amino acids

Sequence
(BLAST)

001: MEDDDDCPPL AVELPPRVPS PPEQSPSDAS PVGITVITGY LGAGKSTLVN YILNEQHGKR IAVILNEFGE EIGVERAMIN EGQGGALIEE WVELANGCVC
101: CSVKHSLVQA LEQLVQRKDR MDHILLETTG LADPAPLVSV LWLDDQLESS IVLDSIITVI DAKNFRVQID EHKNSSSFPE AFHQIAFADV VILNKIDLVE
201: DSLEDLEKHI RDVNALVTVV RSVRCQVDLN EVFNRQAYGA KNSSHLQELL DYSKSVPPSR RHDNSISTLC IYEQDSVNLA KVESWLEDLL WEKKSIMDIY
301: RCKGILYIHD SDQVHTLQAV REVYEVVPAR KWSETESRMN KIVVIGKTSK AAIWISMYFK ILLVVARADN EYLFALHNVS WPFFCEVPLC K

Best Arabidopsis Sequence Match ( AT1G26520.1 )
(BLAST)

001: MLKEEAEGVK MEDDDEEPPM AVQIHPDVSV GKVHSSSDTV SVGVSVITGY LGAGKSTLVN YILNGKHGKR IAVILNEFGE EIGVERAMIN EGEEGAIVEE
101: WVELANGCVC CTVKHSLVQA LEQLVQRKDR LDHILLETTG LANPAPLASI LWLDDQLESE VKLDCIVTVV DAKNLRFQLN ERRDSSSFPE AFNQIAFADT
201: IIMNKVDLIS QEESDELEKE IHSINSLANV IRSVRCQVDL SNILNCQAYD STHVSRLESL LEANKSLTTT DLHDSGVRTL CISEPQPINL DKVRLWLEEI
301: LWDKKSEMDV YRCKAVLSIQ NSDQMHILQA VRDIYEIVPA RKWSEEENRT NKIVFIGHKL DEEVLRSGLR DCRP

Arabidopsis Description

At1g26520 [Source:UniProtKB/TrEMBL;Acc:Q500W8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.