Factsheet for Bra024711.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
peroxisome 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16163	Canola	cytosol	98.35	98.35
CDX85025	Canola	cytosol	95.87	95.08
AT1G26520.1	Thale cress	cytosol	91.46	88.77
KRH75019	Soybean	cytosol	72.73	72.33
PGSC0003DMT400072954	Potato	cytosol	71.63	70.08
Solyc05g012460.2.1	Tomato	cytosol	70.8	69.27
GSMUA_Achr6P24600_001	Banana	cytosol	67.77	66.49
KRH70873	Soybean	cytosol	52.89	64.43
HORVU2Hr1G033960.2	Barley	cytosol	64.19	64.01
Os07t0598900-01	Rice	cytosol	64.19	64.01
KXG36628	Sorghum	cytosol	63.64	63.64
TraesCS2B01G207100.2	Wheat	cytosol	63.64	63.46
TraesCS2D01G188500.1	Wheat	cytosol	63.91	63.39
TraesCS2A01G179800.1	Wheat	cytosol	63.64	62.94
Zm00001d022048_P002	Maize	cytosol	61.71	57.29
Bra026114.1-P	Field mustard	plastid	35.54	28.79
Bra008470.1-P	Field mustard	plastid	34.16	27.25

Protein Annotations

EnsemblPlants:Bra024711.1	EnsemblPlants:Bra024711.1-P	EnsemblPlantsGene:Bra024711	Gene3D:3.30.1220.10	Gene3D:3.40.50.300	InterPro:Cbl_biosynth_CobW-like_C
InterPro:CobW-likC_sf	InterPro:CobW/HypB/UreG_dom	InterPro:IPR036627	InterPro:P-loop_NTPase	PANTHER:PTHR13748	PANTHER:PTHR13748:SF31
PFAM:PF02492	PFAM:PF07683	SEG:seg	SMART:SM00833	SUPFAM:SSF52540	SUPFAM:SSF90002
UniParc:UPI00025427AB	UniProt:M4E7F6	MapMan:35.2	:	:	:

Description

AT1G26520 (E=2e-189) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cobalamin (vitamin B12) biosynthesis CobW-like (InterPro:IPR003495), Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal (InterPro:IPR011629); BEST Arabidopsis thaliana protein match is: PRLI-interacting factor L, putative (TAIR:AT1G15730.1); Has 5407 Blast hits to 5334 proteins in 932 species: Archae - 52; Bacteria - 3259; Metazoa - 131; Fungi - 175; Plants - 131; Viruses - 0; Other Eukaryotes - 1659 (source: NCBI BLink).

Coordinates

chrA09:-:23386190..23388196

Molecular Weight (calculated)

40672.6 Da

IEP (calculated)

4.421

GRAVY (calculated)

-0.186

Length

363 amino acids

Sequence
(BLAST)

001: MADEEEPPMA VQIQPDIPTL SAEESSEAVS VGVTVITGYL GAGKSTLVNY ILNGKHGKKI AVILNEFGEE IGVERAMINE GEGGALVEEW VELANGCICC
101: TVKHSLVQAL EQLVQRKDRL DHILLETTGL ANPAPLASIL WLDDQLESEV KLDCIVTVVD AKNLRFQLNE RRDSSSFPEA FNQIAFADTV IMNKVDLISQ
201: EESDELEKEI HSINSLANVI RSVRCQVDLS NILDCQAYDS THVSRLESLL EANKSLTTTD LHDSGVRTLC ISEPQPINLD KVRLWLEEIL WDKKLDMDVY
301: RCKAVLNIQN SDQMHILQAV KEIYEIVPAR KWSEEENRVN KIVFIGHKLD EEALKTGLRE CRP

Best Arabidopsis Sequence Match ( AT1G26520.1 )
(BLAST)

001: MLKEEAEGVK MEDDDEEPPM AVQIHPDVSV GKVHSSSDTV SVGVSVITGY LGAGKSTLVN YILNGKHGKR IAVILNEFGE EIGVERAMIN EGEEGAIVEE
101: WVELANGCVC CTVKHSLVQA LEQLVQRKDR LDHILLETTG LANPAPLASI LWLDDQLESE VKLDCIVTVV DAKNLRFQLN ERRDSSSFPE AFNQIAFADT
201: IIMNKVDLIS QEESDELEKE IHSINSLANV IRSVRCQVDL SNILNCQAYD STHVSRLESL LEANKSLTTT DLHDSGVRTL CISEPQPINL DKVRLWLEEI
301: LWDKKSEMDV YRCKAVLSIQ NSDQMHILQA VRDIYEIVPA RKWSEEENRT NKIVFIGHKL DEEVLRSGLR DCRP

Arabidopsis Description

At1g26520 [Source:UniProtKB/TrEMBL;Acc:Q500W8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.