Factsheet for GSMUA_Achr6P24600_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G033960.2	Barley	cytosol	68.92	70.05
TraesCS2B01G207100.2	Wheat	cytosol	68.65	69.78
PGSC0003DMT400072954	Potato	cytosol	68.92	68.73
KXG36628	Sorghum	cytosol	67.3	68.59
TraesCS2D01G188500.1	Wheat	cytosol	67.84	68.58
Os07t0598900-01	Rice	cytosol	67.3	68.41
TraesCS2A01G179800.1	Wheat	cytosol	67.57	68.12
Solyc05g012460.2.1	Tomato	cytosol	68.11	67.92
Bra024711.1-P	Field mustard	cytosol	66.49	67.77
CDY16163	Canola	cytosol	65.95	67.22
KRH75019	Soybean	cytosol	65.95	66.85
CDX85025	Canola	cytosol	65.95	66.67
AT1G26520.1	Thale cress	cytosol	65.95	65.24
Zm00001d022048_P002	Maize	cytosol	67.03	63.43
KRH70873	Soybean	cytosol	49.73	61.74
GSMUA_Achr6P01320_001	Banana	mitochondrion	31.62	26.96
GSMUA_Achr7P20870_001	Banana	plastid	30.81	24.95
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, peroxisome, plastid	18.11	13.93

Protein Annotations

EnsemblPlants:GSMUA_Achr6P24600_001	EnsemblPlants:GSMUA_Achr6T24600_001	EnsemblPlantsGene:GSMUA_Achr6G24600_001	Gene3D:3.30.1220.10	Gene3D:3.40.50.300	InterPro:Cbl_biosynth_CobW-like_C
InterPro:CobW-likC_sf	InterPro:CobW/HypB/UreG_dom	InterPro:IPR036627	InterPro:P-loop_NTPase	PANTHER:PTHR13748	PANTHER:PTHR13748:SF31
PFAM:PF02492	PFAM:PF07683	SUPFAM:SSF52540	SUPFAM:SSF90002	UniParc:UPI0002968016	UniProt:M0T9V6
MapMan:35.2	:	:	:	:	:

Description

Putative COBW domain-containing protein 1 [Source:GMGC_GENE;Acc:GSMUA_Achr6G24600_001]

Coordinates

chr6:-:25408435..25414780

Molecular Weight (calculated)

41631.9 Da

IEP (calculated)

4.942

GRAVY (calculated)

-0.247

Length

370 amino acids

Sequence
(BLAST)

001: MENDDDAPPL AVRIGKEPES NPPERSYRSQ NVQRGTSEES PVGVTVITGY LGAGKSTLVN YILNAQHGKK IAVILNEFGE EIGVERAMIN EGEGGALVEE
101: WVELANGCVC CTVKHSLVQA LEQLVQRKER LDHILLETTG LADPAPLASV LWLDDQLESE ITLDSIITVV DAKNLQRQLE EHLKSSFFPE AFLQIAFADV
201: VILNKVDLVL QEGYGLDTSS ILEELEKKIY DINSLATVIH SVRCQVDLCK ILDRQAYGAK NIAHLEKLLE DSKSTFSRSR HDNTLRTLCI YEEQPVDLDM
301: VRSWLEDLLW EKKSNMDVYR CKGVLNVLNS DQLHTLQAVR EIYEIVPARK WHQGKKQMSK IVFIGKAHKS

Best Arabidopsis Sequence Match ( AT1G26520.1 )
(BLAST)

001: MLKEEAEGVK MEDDDEEPPM AVQIHPDVSV GKVHSSSDTV SVGVSVITGY LGAGKSTLVN YILNGKHGKR IAVILNEFGE EIGVERAMIN EGEEGAIVEE
101: WVELANGCVC CTVKHSLVQA LEQLVQRKDR LDHILLETTG LANPAPLASI LWLDDQLESE VKLDCIVTVV DAKNLRFQLN ERRDSSSFPE AFNQIAFADT
201: IIMNKVDLIS QEESDELEKE IHSINSLANV IRSVRCQVDL SNILNCQAYD STHVSRLESL LEANKSLTTT DLHDSGVRTL CISEPQPINL DKVRLWLEEI
301: LWDKKSEMDV YRCKAVLSIQ NSDQMHILQA VRDIYEIVPA RKWSEEENRT NKIVFIGHKL DEEVLRSGLR DCRP

Arabidopsis Description

At1g26520 [Source:UniProtKB/TrEMBL;Acc:Q500W8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.