Factsheet for PGSC0003DMT400072954

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
peroxisome 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g012460.2.1	Tomato	cytosol	97.57	97.57
KRH75019	Soybean	cytosol	71.7	72.88
Bra024711.1-P	Field mustard	cytosol	70.08	71.63
CDY16163	Canola	cytosol	69.27	70.8
CDX85025	Canola	cytosol	69.27	70.22
AT1G26520.1	Thale cress	cytosol	70.08	69.52
GSMUA_Achr6P24600_001	Banana	cytosol	68.73	68.92
KRH70873	Soybean	cytosol	52.83	65.77
KXG36628	Sorghum	cytosol	63.34	64.74
Os07t0598900-01	Rice	cytosol	62.8	64.01
HORVU2Hr1G033960.2	Barley	cytosol	62.53	63.74
TraesCS2B01G207100.2	Wheat	cytosol	62.26	63.46
TraesCS2D01G188500.1	Wheat	cytosol	61.99	62.84
TraesCS2A01G179800.1	Wheat	cytosol	61.46	62.13
Zm00001d022048_P002	Maize	cytosol	61.73	58.57
PGSC0003DMT400024048	Potato	plastid	33.69	29.48
PGSC0003DMT400036661	Potato	plastid	33.69	27.53

Protein Annotations

EnsemblPlants:PGSC0003DMT400072954	EnsemblPlantsGene:PGSC0003DMG400028379	EntrezGene:102602056	Gene3D:3.30.1220.10	Gene3D:3.40.50.300	InterPro:Cbl_biosynth_CobW-like_C
InterPro:CobW-likC_sf	InterPro:CobW/HypB/UreG_dom	InterPro:IPR036627	InterPro:P-loop_NTPase	PANTHER:PTHR13748	PANTHER:PTHR13748:SF31
PFAM:PF02492	PFAM:PF07683	PGSC:PGSC0003DMG400028379	RefSeq:XP_006348708.1	SMART:SM00833	SUPFAM:SSF52540
SUPFAM:SSF90002	UniParc:UPI000294C1E3	UniProt:M1CR98	MapMan:35.2	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400028379]

Coordinates

chr5:+:401975..405845

Molecular Weight (calculated)

41749.1 Da

IEP (calculated)

4.514

GRAVY (calculated)

-0.170

Length

371 amino acids

Sequence
(BLAST)

001: MEDSDEEPPL AVEINDAVNS NQLTEGSEIP PVGVTVITGY LGSGKSTLIN YILKTQHGKK IAVILNEFGE ELGVERAMIN EGEEGNLVEE WVELANGCIC
101: CTVKHSLVQA LEQLVQRKER LDHILLETTG LANPAPLASV LWLDDQLESD VRLDSIITVV DAKNLRYQLK PNPDSSSFPE AYLQIAFADV IILNKVDLIS
201: QDDSGAVLEE LEKEIRDVNS LANIIHSVRC QVDLSKILNC QAYDPTHAAH LEALLKENKS LTTKGLHDSE VRTLCICDAQ QIDLDKVRIW LEELLWDKKY
301: GMDVYRCKGI LRVRNSDELH TLQGVREIYE IVPSRKWRNE EIQMNKIVFI GRFLNEEILL KSLHTCIVGT N

Best Arabidopsis Sequence Match ( AT1G26520.1 )
(BLAST)

001: MLKEEAEGVK MEDDDEEPPM AVQIHPDVSV GKVHSSSDTV SVGVSVITGY LGAGKSTLVN YILNGKHGKR IAVILNEFGE EIGVERAMIN EGEEGAIVEE
101: WVELANGCVC CTVKHSLVQA LEQLVQRKDR LDHILLETTG LANPAPLASI LWLDDQLESE VKLDCIVTVV DAKNLRFQLN ERRDSSSFPE AFNQIAFADT
201: IIMNKVDLIS QEESDELEKE IHSINSLANV IRSVRCQVDL SNILNCQAYD STHVSRLESL LEANKSLTTT DLHDSGVRTL CISEPQPINL DKVRLWLEEI
301: LWDKKSEMDV YRCKAVLSIQ NSDQMHILQA VRDIYEIVPA RKWSEEENRT NKIVFIGHKL DEEVLRSGLR DCRP

Arabidopsis Description

At1g26520 [Source:UniProtKB/TrEMBL;Acc:Q500W8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.