Factsheet for PGSC0003DMT400036661

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
peroxisome 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g117430.2.1	Tomato	plastid	92.73	91.72
VIT_09s0002g08260.t01	Wine grape	plastid	73.35	73.19
GSMUA_Achr7P20870_001	Banana	plastid	72.47	71.99
TraesCS6D01G350100.1	Wheat	plastid	66.96	69.72
AT1G80480.1	Thale cress	plastid	68.06	69.59
KRH36213	Soybean	nucleus	68.28	69.51
HORVU6Hr1G086970.1	Barley	plastid	66.52	67.41
CDY38672	Canola	plastid	67.4	67.11
TraesCS6A01G367100.1	Wheat	plastid	66.3	67.04
CDY36582	Canola	plastid	65.2	66.97
CDY33389	Canola	plastid	65.86	66.89
Bra008470.1-P	Field mustard	plastid	66.96	66.81
KRG92963	Soybean	nucleus	68.5	66.74
Os02t0800000-01	Rice	plastid	65.64	66.67
AT1G15730.1	Thale cress	plastid	64.98	65.85
Bra026114.1-P	Field mustard	plastid	64.98	65.85
KXG31288	Sorghum	plastid	64.1	64.24
TraesCS6B01G402400.1	Wheat	plastid	66.52	63.98
Zm00001d018401_P001	Maize	plastid	61.01	63.1
CDY72248	Canola	plastid	43.61	63.06
VIT_09s0002g08230.t01	Wine grape	cytosol	21.59	60.12
PGSC0003DMT400024048	Potato	plastid	48.68	52.12
PGSC0003DMT400072954	Potato	cytosol	27.53	33.69

Protein Annotations

EnsemblPlants:PGSC0003DMT400036661	EnsemblPlantsGene:PGSC0003DMG400014140	EntrezGene:102582142	Gene3D:3.30.1220.10	Gene3D:3.40.50.300	InterPro:Cbl_biosynth_CobW-like_C
InterPro:CobW-likC_sf	InterPro:CobW/HypB/UreG_dom	InterPro:IPR036627	InterPro:P-loop_NTPase	PANTHER:PTHR13748	PANTHER:PTHR13748:SF43
PFAM:PF02492	PFAM:PF07683	PGSC:PGSC0003DMG400014140	RefSeq:XP_006341395.1	SEG:seg	SMART:SM00833
SUPFAM:SSF52540	SUPFAM:SSF90002	UniParc:UPI0002956D3B	UniProt:M1B403	MapMan:15.6.1.2.3.7	:

Description

Prli-interacting factor l [Source:PGSC_GENE;Acc:PGSC0003DMG400014140]

Coordinates

chr3:+:57170931..57178996

Molecular Weight (calculated)

50492.5 Da

IEP (calculated)

6.295

GRAVY (calculated)

-0.428

Length

454 amino acids

Sequence
(BLAST)

001: MASLSIDIAT TFMGLAKRQT PHFRGLPTLW KTSKCQRFSL STSSSSRISF AINNSSKPNR FSRRFTVSAT STSAPQSEDS DILTKIPQDN RIPATIITGF
101: LGSGKTTLLN HILTADHGMR IAVIENEYGE VDIDGSLVAA KAAGAEEIMM LNNGCLCCTV RGDLVRMIAE LVSRKKGKFD HIVIETTGLA NPAPIIQTFY
201: AEDQVFNDVK LDGVVTLVDS KHVGFHLDET KPKGVVNEAV EQIAYADRII INKTDLVGDS EVSSLIQRIK NINSMAHLKK TQFGKVDLDY VLGIGGFDLE
301: RIESSVGAEG SKEDHTGHDH DHDHHHHHDH DHDHDHEHDH KHEHHDHHHS HDHTHDPGVS SVSIVCEGTL DLEKANMWLG TLLMERSDDI YRMKGLLSVE
401: GMDERFVFQG VHDIFQGSPD RPWKSDEPRT NKIVFIGKNL DAKELEEGFK ACLT

Best Arabidopsis Sequence Match ( AT1G80480.1 )
(BLAST)

001: MATLSTLEIA TTFLSFTAPR SSAAFNYRFS SAAVSVLSRP RATTVSVRTT PSFFYSPVVR RQRFSSVSAS ATQTEDSDVT TKIPPDNRIP ATIITGFLGS
101: GKTTLLNHIL TRDHGKRIAV IENEFGEVDI DGSLVASKSI GAEDIVMLNN GCLCCTVRGD LVRMIGELVN TKKGKFDHIV IETTGLANPA PIIQTFYAEE
201: EIFNDVKLDG VVTLVDAKHA RLHLDEVKPE GVVNEAVEQI AYADRIIVNK TDLVGEAELG SVVQRIKTIN SMAQMTRTKY GNVDLDYVLG IGGFDLERIE
301: SSVNEDDKGD HHDHDHDHHH DHNHDHDHHH HDGHDHHHHS HDHTHDPGVS SVSIVCEGSL DLEKANMWLG TLLMERSEDI YRMKGLLSVH TMEERFVFQG
401: VHDIFQGSPD RLWGREEERV NKIVFIGKNL NREELEKGFK ACLI

Arabidopsis Description

PTAC17At1g80480 [Source:UniProtKB/TrEMBL;Acc:Q9M8L6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.