Factsheet for Solyc03g117430.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
peroxisome 1
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400036661	Potato	plastid	91.72	92.73
VIT_09s0002g08260.t01	Wine grape	plastid	71.68	72.31
GSMUA_Achr7P20870_001	Banana	plastid	71.68	71.99
AT1G80480.1	Thale cress	plastid	67.97	70.27
KRH36213	Soybean	nucleus	67.97	69.96
TraesCS6D01G350100.1	Wheat	plastid	66.45	69.95
HORVU6Hr1G086970.1	Barley	plastid	65.58	67.19
TraesCS6A01G367100.1	Wheat	plastid	65.58	67.04
CDY36582	Canola	plastid	64.49	66.97
AT1G15730.1	Thale cress	plastid	65.36	66.96
Os02t0800000-01	Rice	plastid	65.14	66.89
CDY38672	Canola	plastid	66.23	66.67
CDY33389	Canola	plastid	64.92	66.67
Bra008470.1-P	Field mustard	plastid	66.01	66.59
KRG92963	Soybean	nucleus	67.54	66.52
Bra026114.1-P	Field mustard	plastid	64.71	66.29
KXG31288	Sorghum	plastid	63.62	64.46
TraesCS6B01G402400.1	Wheat	plastid	66.01	64.19
Zm00001d018401_P001	Maize	plastid	60.35	63.1
CDY72248	Canola	plastid	42.92	62.74
VIT_09s0002g08230.t01	Wine grape	cytosol	21.35	60.12
Solyc05g012460.2.1	Tomato	cytosol	26.8	33.15
Solyc08g076020.2.1	Tomato	nucleus	48.37	26.12

Protein Annotations

EnsemblPlants:Solyc03g117430.2.1	EnsemblPlantsGene:Solyc03g117430.2	Gene3D:3.30.1220.10	Gene3D:3.40.50.300	InterPro:Cbl_biosynth_CobW-like_C	InterPro:CobW-likC_sf
InterPro:CobW/HypB/UreG_dom	InterPro:IPR036627	InterPro:P-loop_NTPase	PANTHER:PTHR13748	PANTHER:PTHR13748:SF43	PFAM:PF02492
PFAM:PF07683	SEG:seg	SMART:SM00833	SUPFAM:SSF52540	SUPFAM:SSF90002	UniParc:UPI00027676A6
UniProt:K4BLP5	MapMan:15.6.1.2.3.7	:	:	:	:

Description

No Description!

Coordinates

chr3:+:66599928..66607724

Molecular Weight (calculated)

51001.2 Da

IEP (calculated)

6.317

GRAVY (calculated)

-0.417

Length

459 amino acids

Sequence
(BLAST)

001: MASLSIDIAT TFMGLAKRQT PQFYGLRTAV FPTLWKTSKC QRFSLSTSSS SRISVAINTS SKPNRFSRGF TVSATSTSAP QSEDSDILTK IPQDNRIPAT
101: IITGFLGSGK TTLLNHILTA DHGKRIAVIE NEYGEVDIDG SLVAAKTAGA EEIMMLNNGC LCCTVRGDLV RMIAELVSRK KGKFDHIVIE TTGLANPAPI
201: IQTFYAEDQV FNDVKLDGVV TLVDSKHVGF HLDETKPKGV VNEAVEQIAY ADRIIINKTD LVGDSEVSSL IQRIKNINKM AHLKRTQFGK VDLDYVLGIG
301: GFDLERIESS VGAEGSKEDH TGHDHDHDHD HHHHHDHDHD HEHDHKHEHH DHHHSHDHTH DPGVSSVSIV CEGTLDLEKA NMWLGTLLME RSDDIYRMKG
401: LLSVEGMDER FVFQGVHDIF QGSPDRPWKS DEPRTNKIVF IGKNLDAKEL EEGFKACLT

Best Arabidopsis Sequence Match ( AT1G80480.1 )
(BLAST)

001: MATLSTLEIA TTFLSFTAPR SSAAFNYRFS SAAVSVLSRP RATTVSVRTT PSFFYSPVVR RQRFSSVSAS ATQTEDSDVT TKIPPDNRIP ATIITGFLGS
101: GKTTLLNHIL TRDHGKRIAV IENEFGEVDI DGSLVASKSI GAEDIVMLNN GCLCCTVRGD LVRMIGELVN TKKGKFDHIV IETTGLANPA PIIQTFYAEE
201: EIFNDVKLDG VVTLVDAKHA RLHLDEVKPE GVVNEAVEQI AYADRIIVNK TDLVGEAELG SVVQRIKTIN SMAQMTRTKY GNVDLDYVLG IGGFDLERIE
301: SSVNEDDKGD HHDHDHDHHH DHNHDHDHHH HDGHDHHHHS HDHTHDPGVS SVSIVCEGSL DLEKANMWLG TLLMERSEDI YRMKGLLSVH TMEERFVFQG
401: VHDIFQGSPD RLWGREEERV NKIVFIGKNL NREELEKGFK ACLI

Arabidopsis Description

PTAC17At1g80480 [Source:UniProtKB/TrEMBL;Acc:Q9M8L6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.