CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
plastid 1
peroxisome 1
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	peroxisome
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36213	Soybean	nucleus	89.48	93.5
VIT_09s0002g08260.t01	Wine grape	plastid	70.17	71.87
AT1G80480.1	Thale cress	plastid	65.67	68.92
PGSC0003DMT400036661	Potato	plastid	66.74	68.5
KXG31288	Sorghum	plastid	65.88	67.77
Solyc03g117430.2.1	Tomato	plastid	66.52	67.54
TraesCS6D01G350100.1	Wheat	plastid	63.09	67.43
TraesCS6A01G367100.1	Wheat	plastid	64.81	67.26
CDY38672	Canola	plastid	65.67	67.11
Bra008470.1-P	Field mustard	plastid	65.24	66.81
HORVU6Hr1G086970.1	Barley	plastid	64.16	66.74
Os02t0800000-01	Rice	plastid	63.3	66.0
GSMUA_Achr7P20870_001	Banana	plastid	64.59	65.86
CDY36582	Canola	plastid	62.45	65.84
Zm00001d018401_P001	Maize	plastid	61.8	65.6
CDY33389	Canola	plastid	62.88	65.55
AT1G15730.1	Thale cress	plastid	62.88	65.4
Bra026114.1-P	Field mustard	plastid	62.45	64.96
CDY72248	Canola	plastid	43.56	64.65
VIT_09s0002g08230.t01	Wine grape	cytosol	21.89	62.58
TraesCS6B01G402400.1	Wheat	plastid	63.09	62.29
KRH07677	Soybean	mitochondrion	34.76	46.69
KRH07678	Soybean	cytosol	13.3	46.27
KRH75019	Soybean	cytosol	28.76	36.71
KRH70873	Soybean	cytosol	20.82	32.55

Protein Annotations

EMBL:ACUP02012773	EnsemblPlants:KRG92963	EnsemblPlantsGene:GLYMA_20G240400	Gene3D:3.30.1220.10	Gene3D:3.40.50.300	InterPro:Cbl_biosynth_CobW-like_C
InterPro:CobW-likC_sf	InterPro:CobW/HypB/UreG_dom	InterPro:IPR036627	InterPro:P-loop_NTPase	PANTHER:PTHR13748	PANTHER:PTHR13748:SF43
PFAM:PF02492	PFAM:PF07683	ProteinID:KRG92963	ProteinID:KRG92963.1	SEG:seg	SMART:SM00833
SUPFAM:SSF52540	SUPFAM:SSF90002	UniParc:UPI0002966D3D	UniProt:I1NJ60	MapMan:15.6.1.2.3.7	:

Description

hypothetical protein

Coordinates

chr20:+:47163124..47166527

Molecular Weight (calculated)

52032.9 Da

IEP (calculated)

6.275

GRAVY (calculated)

-0.299

Length

466 amino acids

Sequence
(BLAST)

001: MDSVLFLDFI DKPFLPTIFT TMTFTAEVAC SFFGLAYRNR KPFTLSLQTT LLPLLRRTTT HSHSQSLTFP LRPSRRFSVP ATTTAPPQSE DSDVSTLIPP
101: DNRIPATIIT GFLGSGKTTL LNHILTAEHG KRIAVIENEF GEIDIDGSLV AAKAAGAEDI MMLNNGCLCC TVRGDLVRMI SELVAKKKGK FDHIVIETTG
201: LANPAPIIQT FYAEENIFNE VKLDGVVTLV DAKHAGFHLD EVKPKGVVNE AVEQIAYADR IIVNKTDLVG ESDIASLVQR IRKINSLANL KRTEYGKVNL
301: DYVLGIGGFD LERIENAIND EGAKEDHDHS HDHEHEHHDH DHHHHDHAHS HDHKHEHHDH HSHDHSHDPG VSSVSIVCEG SLDLEKANMW LGTLLLDHSE
401: DIYRMKGLLS VQGMNERFVF QGVHDMFQGS PERLWGPDEP RINKIVFIGK KLDAKELEKG FKACLL

Best Arabidopsis Sequence Match ( AT1G80480.1 )
(BLAST)

001: MATLSTLEIA TTFLSFTAPR SSAAFNYRFS SAAVSVLSRP RATTVSVRTT PSFFYSPVVR RQRFSSVSAS ATQTEDSDVT TKIPPDNRIP ATIITGFLGS
101: GKTTLLNHIL TRDHGKRIAV IENEFGEVDI DGSLVASKSI GAEDIVMLNN GCLCCTVRGD LVRMIGELVN TKKGKFDHIV IETTGLANPA PIIQTFYAEE
201: EIFNDVKLDG VVTLVDAKHA RLHLDEVKPE GVVNEAVEQI AYADRIIVNK TDLVGEAELG SVVQRIKTIN SMAQMTRTKY GNVDLDYVLG IGGFDLERIE
301: SSVNEDDKGD HHDHDHDHHH DHNHDHDHHH HDGHDHHHHS HDHTHDPGVS SVSIVCEGSL DLEKANMWLG TLLMERSEDI YRMKGLLSVH TMEERFVFQG
401: VHDIFQGSPD RLWGREEERV NKIVFIGKNL NREELEKGFK ACLI

Arabidopsis Description

PTAC17At1g80480 [Source:UniProtKB/TrEMBL;Acc:Q9M8L6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.