CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0800000-01	Rice	plastid	84.55	85.68
Zm00001d018401_P001	Maize	plastid	82.34	84.97
TraesCS6D01G350100.1	Wheat	plastid	80.57	83.72
TraesCS6A01G367100.1	Wheat	plastid	82.34	83.07
HORVU6Hr1G086970.1	Barley	plastid	82.12	83.04
TraesCS6B01G402400.1	Wheat	plastid	80.35	77.12
KRH36213	Soybean	nucleus	67.55	68.61
VIT_09s0002g08260.t01	Wine grape	plastid	68.21	67.91
AT1G80480.1	Thale cress	plastid	66.0	67.34
GSMUA_Achr7P20870_001	Banana	plastid	66.67	66.08
KRG92963	Soybean	nucleus	67.77	65.88
AT1G15730.1	Thale cress	plastid	64.9	65.62
CDY36582	Canola	plastid	64.02	65.61
CDY33389	Canola	plastid	63.8	64.65
Bra008470.1-P	Field mustard	plastid	64.46	64.18
PGSC0003DMT400036661	Potato	plastid	64.24	64.1
CDY38672	Canola	plastid	64.46	64.04
CDY72248	Canola	plastid	44.37	64.01
Bra026114.1-P	Field mustard	plastid	63.13	63.84
Solyc03g117430.2.1	Tomato	plastid	64.46	63.62
VIT_09s0002g08230.t01	Wine grape	cytosol	20.53	57.06
OQU82250	Sorghum	mitochondrion	45.25	53.81
KXG36628	Sorghum	cytosol	26.05	32.51

Protein Annotations

EnsemblPlants:KXG31288	EnsemblPlantsGene:SORBI_3004G333400	Gene3D:3.30.1220.10	Gene3D:3.40.50.300	InterPro:Cbl_biosynth_CobW-like_C	InterPro:CobW-likC_sf
InterPro:CobW/HypB/UreG_dom	InterPro:IPR036627	InterPro:P-loop_NTPase	PANTHER:PTHR13748	PANTHER:PTHR13748:SF43	PFAM:PF02492
PFAM:PF07683	ProteinID:KXG31288	ProteinID:KXG31288.1	SEG:seg	SMART:SM00833	SUPFAM:SSF52540
SUPFAM:SSF90002	UniParc:UPI0003C66CCC	UniProt:A0A194YSS1	MapMan:15.6.1.2.3.7	:	:

Description

hypothetical protein

Coordinates

chr4:+:66613985..66619767

Molecular Weight (calculated)

50132.4 Da

IEP (calculated)

6.413

GRAVY (calculated)

-0.328

Length

453 amino acids

Sequence
(BLAST)

001: MAALCSASPA ISAAASLGSP ARRVASLLRL RLRTASCSYS LASAPRAAAA GVPSWRARRR FVASAASTTD AEECSGVETL IPPDNRIPAT IITGFLGSGK
101: TTLLNHILTA HHGKRIAVIE NEFGEVDIDG SLVAAQTAGA EDIMMLNNGC LCCTVRGDLV RMIGELVNKK KGKFDHIVIE TTGLANPAPI IQTFYAEDVV
201: FNDVKLDGVV TLVDAKHARL HLDEVKPKGI VNEAVQQIAY ADRIIVNKVD LVNEPEVSSL VERIRGINRM ANLKRAEYGK VDLDYVLGIG GFDLERIESA
301: VAEKSHEDHA EHDHDHHHHE HEHEHDHHHD HDHHHHHDHD HGHDHHAHDH THDPGVSSVS IVCEGEMDLE KADFWLGNLL LEHSEDIYRM KGLLSVSGMP
401: QRFVFQGVHD IFQGSPERMW EPNEPRINKI VFIGRNLNKE ELEKGFKDCL LKK

Best Arabidopsis Sequence Match ( AT1G80480.1 )
(BLAST)

001: MATLSTLEIA TTFLSFTAPR SSAAFNYRFS SAAVSVLSRP RATTVSVRTT PSFFYSPVVR RQRFSSVSAS ATQTEDSDVT TKIPPDNRIP ATIITGFLGS
101: GKTTLLNHIL TRDHGKRIAV IENEFGEVDI DGSLVASKSI GAEDIVMLNN GCLCCTVRGD LVRMIGELVN TKKGKFDHIV IETTGLANPA PIIQTFYAEE
201: EIFNDVKLDG VVTLVDAKHA RLHLDEVKPE GVVNEAVEQI AYADRIIVNK TDLVGEAELG SVVQRIKTIN SMAQMTRTKY GNVDLDYVLG IGGFDLERIE
301: SSVNEDDKGD HHDHDHDHHH DHNHDHDHHH HDGHDHHHHS HDHTHDPGVS SVSIVCEGSL DLEKANMWLG TLLMERSEDI YRMKGLLSVH TMEERFVFQG
401: VHDIFQGSPD RLWGREEERV NKIVFIGKNL NREELEKGFK ACLI

Arabidopsis Description

PTAC17At1g80480 [Source:UniProtKB/TrEMBL;Acc:Q9M8L6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.