CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36582	Canola	plastid	93.29	94.34
Bra026114.1-P	Field mustard	plastid	88.81	88.62
AT1G15730.1	Thale cress	plastid	83.22	83.04
CDY72248	Canola	plastid	50.11	71.34
CDY38672	Canola	plastid	72.48	71.05
VIT_09s0002g08260.t01	Wine grape	plastid	69.35	68.13
KRH36213	Soybean	nucleus	66.22	66.37
PGSC0003DMT400036661	Potato	plastid	66.89	65.86
Solyc03g117430.2.1	Tomato	plastid	66.67	64.92
TraesCS6D01G350100.1	Wheat	plastid	63.31	64.91
GSMUA_Achr7P20870_001	Banana	plastid	66.0	64.55
Os02t0800000-01	Rice	plastid	64.21	64.21
KXG31288	Sorghum	plastid	64.65	63.8
TraesCS6A01G367100.1	Wheat	plastid	63.98	63.7
HORVU6Hr1G086970.1	Barley	plastid	63.53	63.39
KRG92963	Soybean	nucleus	65.55	62.88
Zm00001d018401_P001	Maize	plastid	60.63	61.73
TraesCS6B01G402400.1	Wheat	plastid	64.21	60.81
VIT_09s0002g08230.t01	Wine grape	cytosol	21.03	57.67
CDY16163	Canola	cytosol	28.64	35.26
CDX85025	Canola	cytosol	28.64	34.97

Protein Annotations

EnsemblPlants:CDY33389	EnsemblPlantsGene:GSBRNA2T00054243001	Gene3D:3.30.1220.10	Gene3D:3.40.50.300	InterPro:Cbl_biosynth_CobW-like_C	InterPro:CobW-likC_sf
InterPro:CobW/HypB/UreG_dom	InterPro:IPR036627	InterPro:P-loop_NTPase	PANTHER:PTHR13748	PANTHER:PTHR13748:SF43	PFAM:PF02492
PFAM:PF07683	ProteinID:CDY33389	ProteinID:CDY33389.1	SEG:seg	SMART:SM00833	SUPFAM:SSF52540
SUPFAM:SSF90002	UniParc:UPI0004EF182B	UniProt:A0A078H7C2	MapMan:15.6.1.2.3.7	:	:

Description

BnaC05g11940DBnaC05g11940D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H7C2]

Coordinates

chrLK032312:+:425221..427573

Molecular Weight (calculated)

50125.9 Da

IEP (calculated)

5.499

GRAVY (calculated)

-0.436

Length

447 amino acids

Sequence
(BLAST)

001: MATLLRLDTS TTFLAFTSPR AGTALNHRFA SATRSRATVS VRRKTSPFDS SSSRVYSDNR RKPFSASATS LAVVETEDPF DVPTELTPDN RIPATIITGF
101: LGSGKTTLLN HILTGDHGKR IAVIENEFGE VDIDGSLVAA KTAGAEDIIL LNNGCLCCTV RGDLVRMISE LVSKKKGRFD HIVIETTGLA NPAPIIQTFY
201: AEDDIFNDVK LDGVVTLVDA KHARLHLDEV KPEGFVNEAV EQIAYADRII VNKTDIVGEQ ELDSVMQRIK TINSMAHMKR TKYGKVDLDY VLGIGGFDLE
301: RIENSVNEEE KEDHDDHHHD HDHSHDCHDH HKEHDHEHGH HDSHDHTHDP GVSSVSLVCE GDLDLEKANM WLGALLYQRS EDIYRMKGIL SVQDMEERFV
401: FQGVHEIFEG SPDRLWQKDE TRTNKIVFIG KNLNREELEM GFRACLV

Best Arabidopsis Sequence Match ( AT1G15730.1 )
(BLAST)

001: MATLLKLDIA TTFLAFIVPR ANTSLNHRFA SARLSTATVS LRTKSSSFYS AALYSDSRRR FHSAVASDSS LAVVDDEDIF DVASEILPDN RIPATIITGF
101: LGSGKTTLLN HILTGDHGKR IAVIENEFGE VDIDGSLVAA QTAGAEDIMM LNNGCLCCTV RGDLVRMISE MVQTKKGRFD HIVIETTGLA NPAPIIQTFY
201: AEDEIFNDVK LDGVVTLVDA KHARLHLDEV KPEGYVNEAV EQIAYADRII VNKTDLVGEP ELASVMQRIK TINSMAHMKR TKYGKVDLDY VLGIGGFDLE
301: RIESSVNEEE KEDREGHDDH HHGHDCHDHH NEHEHEHEHE HHHSHDHTHD PGVGSVSIVC EGDLDLEKAN MWLGALLYQR SEDIYRMKGI LSVQDMDERF
401: VFQGVHEIFE GSPDRLWRKD ETRTNKIVFI GKNLNREELE MGFRACLI

Arabidopsis Description

At1g15730/F7H2_7 [Source:UniProtKB/TrEMBL;Acc:Q9LMR1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.