Factsheet for VIT_09s0002g08260.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36213	Soybean	nucleus	72.75	74.22
PGSC0003DMT400036661	Potato	plastid	73.19	73.35
GSMUA_Achr7P20870_001	Banana	plastid	72.97	72.65
AT1G80480.1	Thale cress	plastid	70.77	72.52
Solyc03g117430.2.1	Tomato	plastid	72.31	71.68
CDY38672	Canola	plastid	71.43	71.27
VIT_09s0002g08230.t01	Wine grape	cytosol	25.49	71.17
Bra008470.1-P	Field mustard	plastid	70.99	70.99
KRG92963	Soybean	nucleus	71.87	70.17
CDY36582	Canola	plastid	68.13	70.14
Bra026114.1-P	Field mustard	plastid	68.57	69.64
Os02t0800000-01	Rice	plastid	68.13	69.35
CDY33389	Canola	plastid	68.13	69.35
AT1G15730.1	Thale cress	plastid	67.91	68.97
TraesCS6D01G350100.1	Wheat	plastid	65.49	68.35
KXG31288	Sorghum	plastid	67.91	68.21
CDY72248	Canola	plastid	45.93	66.56
HORVU6Hr1G086970.1	Barley	plastid	65.27	66.29
Zm00001d018401_P001	Maize	plastid	63.96	66.29
TraesCS6A01G367100.1	Wheat	plastid	65.05	65.92
TraesCS6B01G402400.1	Wheat	plastid	65.49	63.14
VIT_02s0033g00320.t01	Wine grape	mitochondrion	51.65	56.63
VIT_03s0110g00560.t01	Wine grape	mitochondrion	14.51	24.44

Protein Annotations

EntrezGene:100249806	wikigene:100249806	MapMan:15.6.1.2.3.7	Gene3D:3.30.1220.10	Gene3D:3.40.50.300	ProteinID:CBI36422
ProteinID:CBI36422.3	InterPro:Cbl_biosynth_CobW-like_C	InterPro:CobW-likC_sf	InterPro:CobW/HypB/UreG_dom	UniProt:D7TZA8	EMBL:FN596494
InterPro:IPR036627	EntrezGene:LOC100249806	wikigene:LOC100249806	InterPro:P-loop_NTPase	PFAM:PF02492	PFAM:PF07683
PANTHER:PTHR13748	PANTHER:PTHR13748:SF43	SMART:SM00833	SUPFAM:SSF52540	SUPFAM:SSF90002	TIGR:TC65925
UniParc:UPI0001BE4664	ArrayExpress:VIT_09s0002g08260	EnsemblPlantsGene:VIT_09s0002g08260	EnsemblPlants:VIT_09s0002g08260.t01	RefSeq:XP_002268800	RefSeq:XP_002268800.2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr9:-:8876008..8906108

Molecular Weight (calculated)

50579.1 Da

IEP (calculated)

6.508

GRAVY (calculated)

-0.319

Length

455 amino acids

Sequence
(BLAST)

001: MAAVSLDLAT TFLTFASRPR VRTSVLPLLW RPKAYGSHSL NFHSFPVPSR RIVAVAGVSS KPQRDRRRFS AVAAQTTQSE GSDVLTKIPP DDRIPATIIT
101: GFLGSGKTTL LNHILTADHG KRIAVIENEY GEVDIDGSLV AAKTTGAEDI IMLNNGCLCC TVRGDLVRMI SELVNKKKGK FDHIVIETTG LANPAPIIQT
201: FYAEDQIFND VKLDGVVTLV DAKHADFHLD EVKPKGVVNE AVEQIAYADR IIVNKIDLVG EPEIASLVQR IKNINRLAHL KRTEFGKVDL DYVLGVGGFD
301: LERIESAVNS EGVKEDHATH SHDHDHDHDH HDHHHHEHDH RHEHNDHHSH DHTHDPGVSS VSIVCEGSLD LEKANIWLGT LLLERSEDIY RMKGLLSVQG
401: MDERFVFQGV HDIFQGSPDR LWGPDEPRVN KIVFIGKNLD GKELEKGFKA CLLSK

Best Arabidopsis Sequence Match ( AT1G80480.1 )
(BLAST)

001: MATLSTLEIA TTFLSFTAPR SSAAFNYRFS SAAVSVLSRP RATTVSVRTT PSFFYSPVVR RQRFSSVSAS ATQTEDSDVT TKIPPDNRIP ATIITGFLGS
101: GKTTLLNHIL TRDHGKRIAV IENEFGEVDI DGSLVASKSI GAEDIVMLNN GCLCCTVRGD LVRMIGELVN TKKGKFDHIV IETTGLANPA PIIQTFYAEE
201: EIFNDVKLDG VVTLVDAKHA RLHLDEVKPE GVVNEAVEQI AYADRIIVNK TDLVGEAELG SVVQRIKTIN SMAQMTRTKY GNVDLDYVLG IGGFDLERIE
301: SSVNEDDKGD HHDHDHDHHH DHNHDHDHHH HDGHDHHHHS HDHTHDPGVS SVSIVCEGSL DLEKANMWLG TLLMERSEDI YRMKGLLSVH TMEERFVFQG
401: VHDIFQGSPD RLWGREEERV NKIVFIGKNL NREELEKGFK ACLI

Arabidopsis Description

PTAC17At1g80480 [Source:UniProtKB/TrEMBL;Acc:Q9M8L6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.