Factsheet for Zm00001d018401_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
extracellular: 20408568
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG31288	Sorghum	plastid	84.97	82.34
TraesCS6D01G350100.1	Wheat	plastid	79.95	80.5
HORVU6Hr1G086970.1	Barley	plastid	80.18	78.57
TraesCS6A01G367100.1	Wheat	plastid	79.73	77.95
Os02t0800000-01	Rice	plastid	79.27	77.85
TraesCS6B01G402400.1	Wheat	plastid	79.04	73.52
KRH36213	Soybean	nucleus	65.6	64.57
AT1G80480.1	Thale cress	plastid	64.69	63.96
VIT_09s0002g08260.t01	Wine grape	plastid	66.29	63.96
GSMUA_Achr7P20870_001	Banana	plastid	66.06	63.46
CDY72248	Canola	plastid	44.87	62.74
AT1G15730.1	Thale cress	plastid	63.1	61.83
KRG92963	Soybean	nucleus	65.6	61.8
CDY36582	Canola	plastid	62.19	61.76
PGSC0003DMT400036661	Potato	plastid	63.1	61.01
Bra008470.1-P	Field mustard	plastid	63.1	60.88
Bra026114.1-P	Field mustard	plastid	61.96	60.71
CDY33389	Canola	plastid	61.73	60.63
CDY38672	Canola	plastid	62.87	60.53
Solyc03g117430.2.1	Tomato	plastid	63.1	60.35
VIT_09s0002g08230.t01	Wine grape	cytosol	18.0	48.47
Zm00001d022048_P002	Maize	cytosol	26.2	29.41

Protein Annotations

EnsemblPlants:Zm00001d018401_P001	EnsemblPlants:Zm00001d018401_T001	EnsemblPlantsGene:Zm00001d018401	Gene3D:3.30.1220.10	Gene3D:3.40.50.300	InterPro:Cbl_biosynth_CobW-like_C
InterPro:CobW-likC_sf	InterPro:CobW/HypB/UreG_dom	InterPro:IPR036627	InterPro:P-loop_NTPase	PANTHER:PTHR13748	PANTHER:PTHR13748:SF43
PFAM:PF02492	PFAM:PF07683	ProteinID:AQK75868.1	SEG:seg	SMART:SM00833	SUPFAM:SSF52540
SUPFAM:SSF90002	UniParc:UPI00084398AE	UniProt:A0A1D6HNJ7	MapMan:15.6.1.2.3.7	:	:

Description

plastid transcriptionally active 17

Coordinates

chr5:+:219999576..220004268

Molecular Weight (calculated)

48881.2 Da

IEP (calculated)

6.612

GRAVY (calculated)

-0.333

Length

439 amino acids

Sequence
(BLAST)

001: MAALCSASPA ISAAASLGSP ARVVASFLRL RLRLRAAKRS CSHAPAPSWR ARRRFAAAAA EAEECSGVET LIPPDNRIPA TIITGFLGSG KTTLLNHILT
101: AHHGKRIAVI ENEFGEVDID GSLVAAQTAG AEDIMMLNNG CLCCTVRGDL VRMIGELVNK KKGRFDHIVI ETTGLANPAP IIQTFYAEDV VFNDVKLDGV
201: VTLVDAKHAR QHLDEVKPKG IVNEAVQQIA YADRIIVNKI DLVKEPEVLS LVERIRGINH MANLKRAEYG KVDLDYVLGI GGFDLESYQF RTVGIKEIHS
301: GYRIESAVAE KSHEDHAEHD HEHHEHENEH DHDHHHHHDH DHDHHAHDHT HDPGVSSADM WLGNLLLEHS EDIYRMKGLL SVSGMPQRFV FQGVHDIFQG
401: SPERMWEPNE PRINKIVFIG RNLNKEELDK GFKDCLLKK

Best Arabidopsis Sequence Match ( AT1G80480.1 )
(BLAST)

001: MATLSTLEIA TTFLSFTAPR SSAAFNYRFS SAAVSVLSRP RATTVSVRTT PSFFYSPVVR RQRFSSVSAS ATQTEDSDVT TKIPPDNRIP ATIITGFLGS
101: GKTTLLNHIL TRDHGKRIAV IENEFGEVDI DGSLVASKSI GAEDIVMLNN GCLCCTVRGD LVRMIGELVN TKKGKFDHIV IETTGLANPA PIIQTFYAEE
201: EIFNDVKLDG VVTLVDAKHA RLHLDEVKPE GVVNEAVEQI AYADRIIVNK TDLVGEAELG SVVQRIKTIN SMAQMTRTKY GNVDLDYVLG IGGFDLERIE
301: SSVNEDDKGD HHDHDHDHHH DHNHDHDHHH HDGHDHHHHS HDHTHDPGVS SVSIVCEGSL DLEKANMWLG TLLMERSEDI YRMKGLLSVH TMEERFVFQG
401: VHDIFQGSPD RLWGREEERV NKIVFIGKNL NREELEKGFK ACLI

Arabidopsis Description

PTAC17At1g80480 [Source:UniProtKB/TrEMBL;Acc:Q9M8L6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.