CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 8
peroxisome 1
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG92963	Soybean	nucleus	93.5	89.48
VIT_09s0002g08260.t01	Wine grape	plastid	74.22	72.75
AT1G80480.1	Thale cress	plastid	69.96	70.27
TraesCS6D01G350100.1	Wheat	plastid	67.49	69.04
TraesCS6A01G367100.1	Wheat	plastid	68.83	68.37
PGSC0003DMT400036661	Potato	plastid	69.51	68.28
HORVU6Hr1G086970.1	Barley	plastid	68.39	68.08
CDY38672	Canola	plastid	69.51	67.98
Solyc03g117430.2.1	Tomato	plastid	69.96	67.97
Bra008470.1-P	Field mustard	plastid	69.06	67.69
KXG31288	Sorghum	plastid	68.61	67.55
GSMUA_Achr7P20870_001	Banana	plastid	68.39	66.74
AT1G15730.1	Thale cress	plastid	66.59	66.29
CDY33389	Canola	plastid	66.37	66.22
Os02t0800000-01	Rice	plastid	66.37	66.22
CDY36582	Canola	plastid	65.47	66.06
Zm00001d018401_P001	Maize	plastid	64.57	65.6
Bra026114.1-P	Field mustard	plastid	65.47	65.18
CDY72248	Canola	plastid	45.74	64.97
VIT_09s0002g08230.t01	Wine grape	cytosol	22.87	62.58
TraesCS6B01G402400.1	Wheat	plastid	65.92	62.29
KRH07677	Soybean	mitochondrion	36.1	46.4
KRH07678	Soybean	cytosol	13.68	45.52
KRH75019	Soybean	cytosol	29.6	36.16
KRH70873	Soybean	cytosol	20.85	31.21

Protein Annotations

EntrezGene:100820337	MapMan:15.6.1.2.3.7	Gene3D:3.30.1220.10	Gene3D:3.40.50.300	UniProt:A0A0R0I7G4	EMBL:ACUP02006721
InterPro:Cbl_biosynth_CobW-like_C	InterPro:CobW-likC_sf	InterPro:CobW/HypB/UreG_dom	EnsemblPlantsGene:GLYMA_10G291200	InterPro:IPR036627	EnsemblPlants:KRH36213
ProteinID:KRH36213	ProteinID:KRH36213.1	InterPro:P-loop_NTPase	PFAM:PF02492	PFAM:PF07683	PANTHER:PTHR13748
PANTHER:PTHR13748:SF43	SMART:SM00833	SUPFAM:SSF52540	SUPFAM:SSF90002	UniParc:UPI0001B63779	SEG:seg

Description

hypothetical protein

Coordinates

chr10:+:50918962..50922241

Molecular Weight (calculated)

49623.8 Da

IEP (calculated)

6.240

GRAVY (calculated)

-0.343

Length

446 amino acids

Sequence
(BLAST)

001: MSSLTFTTEV ASSFLGLAYH NPKPFTLSLQ TTLLPLLRRT TTHSRSLTFP LRPSRRFFVT SATTAPPQSE DSDVSTVIPP DNRIPATIIT GFLGSGKTTL
101: LNHILTAEHG KKIAVIENEF GEIDIDGSLV AAKTAGAEDI MMLNNGCLCC TVRGDLVRMI SELVAKKKGK FDHIVIETTG LANPAPIIQT FYAEENIFND
201: VKLDGVVTLV DAKHAGFHLD EVKPKGVVNE AVEQIAYADR IIVNKTDLVG ESDIASLVQR IRKINSLANL KRTEYGKVNL DYVLGIGGFD LERIENAIND
301: EGAKEDHDHS HDHEHEHHDH DHHHHDHDHS HDHKHEHHDH HSHDHSHDPG VSSVSIVCEG SLDLEKANMW LGTLLLDRSE DIYRMKGLLS VQGMNERFVF
401: QGVHDIFQGS PERLWGPDEP RVNKIVFIGK NLDAKELEKG FKACLL

Best Arabidopsis Sequence Match ( AT1G80480.1 )
(BLAST)

001: MATLSTLEIA TTFLSFTAPR SSAAFNYRFS SAAVSVLSRP RATTVSVRTT PSFFYSPVVR RQRFSSVSAS ATQTEDSDVT TKIPPDNRIP ATIITGFLGS
101: GKTTLLNHIL TRDHGKRIAV IENEFGEVDI DGSLVASKSI GAEDIVMLNN GCLCCTVRGD LVRMIGELVN TKKGKFDHIV IETTGLANPA PIIQTFYAEE
201: EIFNDVKLDG VVTLVDAKHA RLHLDEVKPE GVVNEAVEQI AYADRIIVNK TDLVGEAELG SVVQRIKTIN SMAQMTRTKY GNVDLDYVLG IGGFDLERIE
301: SSVNEDDKGD HHDHDHDHHH DHNHDHDHHH HDGHDHHHHS HDHTHDPGVS SVSIVCEGSL DLEKANMWLG TLLMERSEDI YRMKGLLSVH TMEERFVFQG
401: VHDIFQGSPD RLWGREEERV NKIVFIGKNL NREELEKGFK ACLI

Arabidopsis Description

PTAC17At1g80480 [Source:UniProtKB/TrEMBL;Acc:Q9M8L6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.