CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
peroxisome 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH70873	Soybean	cytosol	64.11	78.52
Bra024711.1-P	Field mustard	cytosol	72.33	72.73
CDY16163	Canola	cytosol	72.05	72.45
CDX85025	Canola	cytosol	72.05	71.86
PGSC0003DMT400072954	Potato	cytosol	72.88	71.7
Solyc05g012460.2.1	Tomato	cytosol	72.6	71.43
AT1G26520.1	Thale cress	cytosol	72.33	70.59
GSMUA_Achr6P24600_001	Banana	cytosol	66.85	65.95
Os07t0598900-01	Rice	cytosol	64.66	64.84
HORVU2Hr1G033960.2	Barley	cytosol	63.01	63.19
KXG36628	Sorghum	cytosol	62.74	63.09
TraesCS2B01G207100.2	Wheat	cytosol	62.47	62.64
TraesCS2A01G179800.1	Wheat	cytosol	62.74	62.4
TraesCS2D01G188500.1	Wheat	cytosol	62.19	62.02
Zm00001d022048_P002	Maize	cytosol	61.64	57.54
KRH07678	Soybean	cytosol	12.33	33.58
KRH36213	Soybean	nucleus	36.16	29.6
KRH07677	Soybean	mitochondrion	27.67	29.11
KRG92963	Soybean	nucleus	36.71	28.76

Protein Annotations

EMBL:ACUP02000106	EnsemblPlants:KRH75019	EnsemblPlantsGene:GLYMA_01G057400	EntrezGene:100780351	Gene3D:3.30.1220.10	Gene3D:3.40.50.300
InterPro:Cbl_biosynth_CobW-like_C	InterPro:CobW-likC_sf	InterPro:CobW/HypB/UreG_dom	InterPro:IPR036627	InterPro:P-loop_NTPase	PANTHER:PTHR13748
PANTHER:PTHR13748:SF31	PFAM:PF02492	PFAM:PF07683	ProteinID:KRH75019	ProteinID:KRH75019.1	SEG:seg
SUPFAM:SSF52540	SUPFAM:SSF90002	UniParc:UPI0002336B6E	UniProt:I1J5Z1	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr1:+:7574367..7578581

Molecular Weight (calculated)

41286.3 Da

IEP (calculated)

4.691

GRAVY (calculated)

-0.228

Length

365 amino acids

Sequence
(BLAST)

001: MEHDEDEEPP LAVQIQGNDE SVSQQSSSVG VTLITGYLGS GKSTLVNHIL NSQHGKRIAV ILNEFGEEIG VERAMINEGD KGALVEEWVE LANGCICCTV
101: KHSLVQALEQ LVQRKERLDH ILLETTGLAN PAPLASVLWL DEQLESEVKL DSIVTVVDAK NLRFQLDEHR GSSSFPEAYF QIAFADIIIL NKVDLVSVES
201: SGALEELEVE IHNINSLAEI IHSVRCQVDL SKILNRQAYD TARATQLEAL LEESRSLSTK KLHDSDVRTI CICETRMINL DKTRIWLEEI LWEKKYDMDV
301: YRCKGVLSVQ NSDQLHTLQA VKELYEIVPS RKWEKEEKRI NKIVFIGHNL KEDILINSFR DRATC

Best Arabidopsis Sequence Match ( AT1G26520.1 )
(BLAST)

001: MLKEEAEGVK MEDDDEEPPM AVQIHPDVSV GKVHSSSDTV SVGVSVITGY LGAGKSTLVN YILNGKHGKR IAVILNEFGE EIGVERAMIN EGEEGAIVEE
101: WVELANGCVC CTVKHSLVQA LEQLVQRKDR LDHILLETTG LANPAPLASI LWLDDQLESE VKLDCIVTVV DAKNLRFQLN ERRDSSSFPE AFNQIAFADT
201: IIMNKVDLIS QEESDELEKE IHSINSLANV IRSVRCQVDL SNILNCQAYD STHVSRLESL LEANKSLTTT DLHDSGVRTL CISEPQPINL DKVRLWLEEI
301: LWDKKSEMDV YRCKAVLSIQ NSDQMHILQA VRDIYEIVPA RKWSEEENRT NKIVFIGHKL DEEVLRSGLR DCRP

Arabidopsis Description

At1g26520 [Source:UniProtKB/TrEMBL;Acc:Q500W8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.