CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
peroxisome 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d022048_P002	Maize	cytosol	92.01	85.42
HORVU2Hr1G033960.2	Barley	cytosol	85.4	85.16
TraesCS2D01G188500.1	Wheat	cytosol	85.67	84.97
TraesCS2A01G179800.1	Wheat	cytosol	85.67	84.74
Os07t0598900-01	Rice	cytosol	84.3	84.07
TraesCS2B01G207100.2	Wheat	cytosol	84.02	83.79
GSMUA_Achr6P24600_001	Banana	cytosol	68.59	67.3
CDY16163	Canola	cytosol	63.91	63.91
CDX85025	Canola	cytosol	64.19	63.66
Bra024711.1-P	Field mustard	cytosol	63.64	63.64
PGSC0003DMT400072954	Potato	cytosol	64.74	63.34
AT1G26520.1	Thale cress	cytosol	64.74	62.83
Solyc05g012460.2.1	Tomato	cytosol	64.19	62.8
KRH75019	Soybean	cytosol	63.09	62.74
KRH70873	Soybean	cytosol	47.11	57.38
OQU82250	Sorghum	mitochondrion	31.41	29.92
KXG31288	Sorghum	plastid	32.51	26.05

Protein Annotations

Gene3D:3.30.1220.10	Gene3D:3.40.50.300	MapMan:35.2	UniProt:A0A1B6QFC4	InterPro:Cbl_biosynth_CobW-like_C	InterPro:CobW-likC_sf
InterPro:CobW/HypB/UreG_dom	ncoils:Coil	InterPro:IPR036627	ProteinID:KXG36627.1	EnsemblPlants:KXG36628	ProteinID:KXG36628
ProteinID:KXG36628.1	InterPro:P-loop_NTPase	PFAM:PF02492	PFAM:PF07683	PANTHER:PTHR13748	PANTHER:PTHR13748:SF31
SMART:SM00833	EnsemblPlantsGene:SORBI_3002G364800	SUPFAM:SSF52540	SUPFAM:SSF90002	UniParc:UPI0001C80E39	SEG:seg

Description

hypothetical protein

Coordinates

chr2:+:72539353..72549086

Molecular Weight (calculated)

40664.3 Da

IEP (calculated)

4.503

GRAVY (calculated)

-0.185

Length

363 amino acids

Sequence
(BLAST)

001: MEDDDDCPPL AVELPPQVPS PPAQAPSDAS PVGVTVITGY LGAGKSTLVN YILNEQHGKR IAVILNEFGE EIGVERAMIN EGQGGALVEE WVELANGCVC
101: CSVKHSLVQA LEQLVQRKDR MDHILLETTG LADPAPLVSV LWLDDQLESS IRLDSIITVI DAKNFRVQID EHKNSSSFPE AFHQIAFADV VILNKIDLVE
201: DNLEDLEKHI HDVNALVTVV RSVRCQVDLN EVFNRQAYGV KDSSHLQELL DYSKSVPPSR RHDNNISTLC IYEQDSVNLA KVESWLEDLL WEKKSSMDIY
301: RCKGILYIHD SDQVHTLQAV REVYEVVPAR KWSETESRMN KIVVIGRNLD INVLQDSFSV CKS

Best Arabidopsis Sequence Match ( AT1G26520.1 )
(BLAST)

001: MLKEEAEGVK MEDDDEEPPM AVQIHPDVSV GKVHSSSDTV SVGVSVITGY LGAGKSTLVN YILNGKHGKR IAVILNEFGE EIGVERAMIN EGEEGAIVEE
101: WVELANGCVC CTVKHSLVQA LEQLVQRKDR LDHILLETTG LANPAPLASI LWLDDQLESE VKLDCIVTVV DAKNLRFQLN ERRDSSSFPE AFNQIAFADT
201: IIMNKVDLIS QEESDELEKE IHSINSLANV IRSVRCQVDL SNILNCQAYD STHVSRLESL LEANKSLTTT DLHDSGVRTL CISEPQPINL DKVRLWLEEI
301: LWDKKSEMDV YRCKAVLSIQ NSDQMHILQA VRDIYEIVPA RKWSEEENRT NKIVFIGHKL DEEVLRSGLR DCRP

Arabidopsis Description

At1g26520 [Source:UniProtKB/TrEMBL;Acc:Q500W8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.