Factsheet for VIT_02s0033g00320.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
peroxisome 1
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH07678	Soybean	cytosol	23.13	71.64
PGSC0003DMT400024048	Potato	plastid	71.08	69.58
OQU82250	Sorghum	mitochondrion	63.37	69.03
TraesCS2A01G439900.1	Wheat	mitochondrion	66.99	68.98
Os04t0599700-01	Rice	mitochondrion	67.95	68.61
GSMUA_Achr6P01320_001	Banana	mitochondrion	69.88	66.82
KRH07677	Soybean	mitochondrion	52.53	62.82
VIT_09s0002g08260.t01	Wine grape	plastid	56.63	51.65
VIT_09s0002g08230.t01	Wine grape	cytosol	16.39	41.72
Solyc08g076020.2.1	Tomato	nucleus	70.6	34.47
VIT_03s0110g00560.t01	Wine grape	mitochondrion	15.42	23.7

Protein Annotations

EntrezGene:100265506	wikigene:100265506	MapMan:15.6.1.2.3.7	Gene3D:3.30.1220.10	Gene3D:3.40.50.300	ProteinID:CBI37390
ProteinID:CBI37390.3	InterPro:Cbl_biosynth_CobW-like_C	InterPro:CobW-likC_sf	InterPro:CobW/HypB/UreG_dom	UniProt:D7U3S1	EMBL:FN596505
InterPro:IPR036627	EntrezGene:LOC100265506	wikigene:LOC100265506	InterPro:P-loop_NTPase	PFAM:PF02492	PFAM:PF07683
PANTHER:PTHR13748	PANTHER:PTHR13748:SF40	SMART:SM00833	SUPFAM:SSF52540	SUPFAM:SSF90002	UniParc:UPI00015CB6BC
ArrayExpress:VIT_02s0033g00320	EnsemblPlantsGene:VIT_02s0033g00320	EnsemblPlants:VIT_02s0033g00320.t01	unigene:Vvi.18150	RefSeq:XP_002264766	RefSeq:XP_002264766.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2:-:14047004..14071583

Molecular Weight (calculated)

46144.3 Da

IEP (calculated)

6.612

GRAVY (calculated)

-0.189

Length

415 amino acids

Sequence
(BLAST)

001: MATRLLSRTT TKSLCKTLHH HFQHSSSCLV QLLRNAHVLG SSPFDSTKFL YRNSRGMVCA PNYDISSLNL DNRVPATVIT GFLGSGKTTL LNHILTSQHG
101: KRIAVIENEF GEVDIDGSLV ASHSSVAEDI VMVNNGCLCC TVRGDLVKML LELVKKKRDK FDHIVIETTG LAKPAPVIET FCTDELVSRY VKLDGVVTLV
201: DAKHAMQHLD EVKPRFVVNE AVEQVAYADR IILNKIDLVT EADLERLTQR IKHINGMAQI KLAKFGCVDM DFVLGVGGYD LERIDSEVQV DSSHCATHQH
301: ETGKGHHKGH HHDHVHDSAV SSVSIVSEGT LDLDEVDDWL ERLLEEKGED LYRMKGVLCV NGSDERYVFQ GVHSTLDGCP GKTWEPDEKR VSKLVFIGRN
401: LDETALRKGF RGCLV

Best Arabidopsis Sequence Match ( AT1G80480.1 )
(BLAST)

001: MATLSTLEIA TTFLSFTAPR SSAAFNYRFS SAAVSVLSRP RATTVSVRTT PSFFYSPVVR RQRFSSVSAS ATQTEDSDVT TKIPPDNRIP ATIITGFLGS
101: GKTTLLNHIL TRDHGKRIAV IENEFGEVDI DGSLVASKSI GAEDIVMLNN GCLCCTVRGD LVRMIGELVN TKKGKFDHIV IETTGLANPA PIIQTFYAEE
201: EIFNDVKLDG VVTLVDAKHA RLHLDEVKPE GVVNEAVEQI AYADRIIVNK TDLVGEAELG SVVQRIKTIN SMAQMTRTKY GNVDLDYVLG IGGFDLERIE
301: SSVNEDDKGD HHDHDHDHHH DHNHDHDHHH HDGHDHHHHS HDHTHDPGVS SVSIVCEGSL DLEKANMWLG TLLMERSEDI YRMKGLLSVH TMEERFVFQG
401: VHDIFQGSPD RLWGREEERV NKIVFIGKNL NREELEKGFK ACLI

Arabidopsis Description

PTAC17At1g80480 [Source:UniProtKB/TrEMBL;Acc:Q9M8L6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.