Factsheet for Os04t0599700-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
peroxisome 2
mitochondrion 5
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G439900.1	Wheat	mitochondrion	83.21	84.86
OQU82250	Sorghum	mitochondrion	74.21	80.05
VIT_02s0033g00320.t01	Wine grape	mitochondrion	68.61	67.95
GSMUA_Achr6P01320_001	Banana	mitochondrion	71.29	67.51
PGSC0003DMT400024048	Potato	plastid	67.4	65.33
KRH07678	Soybean	cytosol	21.17	64.93
KRH07677	Soybean	mitochondrion	48.42	57.35
Os02t0800000-01	Rice	plastid	51.09	46.98
Solyc08g076020.2.1	Tomato	nucleus	68.13	32.94
Os07t0598900-01	Rice	cytosol	28.95	32.69

Protein Annotations

MapMan:15.6.1.2.3.7	Gene3D:3.30.1220.10	Gene3D:3.40.50.300	EntrezGene:4336869	EMBL:AK065249	ProteinID:BAF15667.1
ProteinID:BAS90824.1	ProteinID:CAE03469.2	InterPro:Cbl_biosynth_CobW-like_C	InterPro:CobW-likC_sf	InterPro:CobW/HypB/UreG_dom	ProteinID:EEE61609.1
InterPro:IPR036627	EnsemblPlantsGene:Os04g0599700	EnsemblPlants:Os04t0599700-01	InterPro:P-loop_NTPase	PFAM:PF02492	PFAM:PF07683
PANTHER:PTHR13748	PANTHER:PTHR13748:SF40	UniProt:Q7XPT4	SMART:SM00833	SUPFAM:SSF52540	SUPFAM:SSF90002
UniParc:UPI000021C779	RefSeq:XP_015635404.1	SEG:seg	:	:	:

Description

Cobalamin (vitamin B12) biosynthesis CobW-like domain containing protein. (Os04t0599700-01)

Coordinates

chr4:+:30264259..30267376

Molecular Weight (calculated)

45230.4 Da

IEP (calculated)

6.365

GRAVY (calculated)

-0.118

Length

411 amino acids

Sequence
(BLAST)

001: MAAAAARLLE RATRTAASCS SALLRSPLDS FSGRFPSFRS PLLRPAPAPS TVFPRGLSDT AFDAQALDTR VPATVITGFL GSGKTTLLNH ILTSQHGKRI
101: AVIENEFGEV DIDSSLVASH SSVAEDIVMV NNGCLCCTVR GDLVKMLLKL VKQKGDKFDH IVIETTGLAK PGPVIETFCS DELVSRYVKL DGVVTMVDCK
201: HAMKHLNEVK ARWVVNEAVE QVAYADRIIL NKTDLVDNAE LEVLINKIKL INGMAQMRKT KFGDVDMDFV LGIGGYDLDR IESEVQLHER KETGHCHAGE
301: EHGHQHHHGH VHDSAVSSVS IVSEGVLDLD EVNDWLERLV EEKGEDLYRL KGVISVNEST GRFVFQGVHS MLEGCPAKPW EPDEKRFNKL VFIGRNLDEA
401: ALRKAFKGCL L

Best Arabidopsis Sequence Match ( AT1G80480.1 )
(BLAST)

001: MATLSTLEIA TTFLSFTAPR SSAAFNYRFS SAAVSVLSRP RATTVSVRTT PSFFYSPVVR RQRFSSVSAS ATQTEDSDVT TKIPPDNRIP ATIITGFLGS
101: GKTTLLNHIL TRDHGKRIAV IENEFGEVDI DGSLVASKSI GAEDIVMLNN GCLCCTVRGD LVRMIGELVN TKKGKFDHIV IETTGLANPA PIIQTFYAEE
201: EIFNDVKLDG VVTLVDAKHA RLHLDEVKPE GVVNEAVEQI AYADRIIVNK TDLVGEAELG SVVQRIKTIN SMAQMTRTKY GNVDLDYVLG IGGFDLERIE
301: SSVNEDDKGD HHDHDHDHHH DHNHDHDHHH HDGHDHHHHS HDHTHDPGVS SVSIVCEGSL DLEKANMWLG TLLMERSEDI YRMKGLLSVH TMEERFVFQG
401: VHDIFQGSPD RLWGREEERV NKIVFIGKNL NREELEKGFK ACLI

Arabidopsis Description

PTAC17At1g80480 [Source:UniProtKB/TrEMBL;Acc:Q9M8L6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.