Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- peroxisome 1
- mitochondrion 3
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400024048 | Potato | plastid | 43.29 | 86.79 |
| KRH07678 | Soybean | cytosol | 11.88 | 75.37 |
| VIT_02s0033g00320.t01 | Wine grape | mitochondrion | 34.47 | 70.6 |
| TraesCS2A01G439900.1 | Wheat | mitochondrion | 32.47 | 68.49 |
| Os04t0599700-01 | Rice | mitochondrion | 32.94 | 68.13 |
| OQU82250 | Sorghum | mitochondrion | 30.35 | 67.72 |
| GSMUA_Achr6P01320_001 | Banana | mitochondrion | 33.76 | 66.13 |
| KRH07677 | Soybean | mitochondrion | 24.12 | 59.08 |
| Solyc03g117430.2.1 | Tomato | plastid | 26.12 | 48.37 |
| Solyc05g012460.2.1 | Tomato | cytosol | 14.24 | 32.61 |
Protein Annotations
| MapMan:12.3.3.1.2.5 | MapMan:15.6.1.2.3.7 | Gene3D:2.30.30.140 | Gene3D:3.30.1220.10 | Gene3D:3.40.50.300 | InterPro:Cbl_biosynth_CobW-like_C |
| InterPro:CobW-likC_sf | InterPro:CobW/HypB/UreG_dom | InterPro:IPR000313 | InterPro:IPR036627 | UniProt:K4CMW9 | InterPro:P-loop_NTPase |
| PFAM:PF00855 | PFAM:PF02492 | PFAM:PF07683 | PFscan:PS50812 | PANTHER:PTHR13748 | PANTHER:PTHR13748:SF40 |
| InterPro:PWWP_dom | SMART:SM00833 | SUPFAM:SSF52540 | SUPFAM:SSF63748 | SUPFAM:SSF90002 | EnsemblPlantsGene:Solyc08g076020.2 |
| EnsemblPlants:Solyc08g076020.2.1 | UniParc:UPI000276BAD3 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr8:-:60072920..60082321
Molecular Weight (calculated)
94890.8 Da
IEP (calculated)
9.236
GRAVY (calculated)
-0.486
Length
850 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGPVIERRG GSVVWVLRQN GTWWPGRILC INEIPTSGIL SCTDFSSRFP IKLLGRDDAS VYWYNLEKSS RVKAFRCGEF DSCIKKAESS KTLTYTRSLK
101: YAHREDAILH ALELEKQDLE KLGRQVFVSG FKEGEIHGES NQRAKRSRRF YSPIDSISFL EKSVHSQSSN KVATSIHATE ISSSKSTSSL KSDSQSSHKK
201: RETTAGNNAL RPMKMSFKVI SRPAVNQWKD VNQKSQPSPG NSFTEDNSIQ SLNSKFTTLQ NSTKTLIDVH MTVQSTYRGE HTPLVSLMSR LNGKAIIGHP
301: INIEVLYDSS MLPVEKECSD QLKNRSRMPQ LVWRTSKRTP VCYTSSTSSA TKYENLQHSS KKLGDLSSQA RKNGLFNTKS RGKLSKKPNM SKNKSRSLYL
401: ADSRIKNTCV PVKDIFIKLI GALGNMATLK YLLSKSSTPL KLSNPLHLHR SNNNFNRISK FLRALNSFAS GQFHCHSPNS RSFSTSPEYV AQDSDSSVAA
501: ALNLDSRVPA TVITGFLGSG KTTLLNHILT SQHGKRIAVI ENEFGEVDID GSLVASHSSS NEEILMVNNG CLCCTVRGDL VKMLLELVKN RRDRFDHIVI
601: ETTGLAKPGP VIETFCSDEL VSRHVKLDGV VTLVDSKHAL QHLNKVKPRF VSNEAVEQVA YADRIILNKI DLVTESELEV LTKRIKHING MAQIKKAKHG
701: VVDMDFVLGV GGYDLDRVDS EVQSEGSHCG HKHEDEHEHH KGHHHDHVHD SAVSSVSIVS EGTLDLDEVD DWLERLIEEN GDDLYRMKGV LSVSDSEQRY
801: VFQGVHSVLD GCPGKTWEPN EKRINKLVFI GRNLDETALR KGFKGCLCEE
101: YAHREDAILH ALELEKQDLE KLGRQVFVSG FKEGEIHGES NQRAKRSRRF YSPIDSISFL EKSVHSQSSN KVATSIHATE ISSSKSTSSL KSDSQSSHKK
201: RETTAGNNAL RPMKMSFKVI SRPAVNQWKD VNQKSQPSPG NSFTEDNSIQ SLNSKFTTLQ NSTKTLIDVH MTVQSTYRGE HTPLVSLMSR LNGKAIIGHP
301: INIEVLYDSS MLPVEKECSD QLKNRSRMPQ LVWRTSKRTP VCYTSSTSSA TKYENLQHSS KKLGDLSSQA RKNGLFNTKS RGKLSKKPNM SKNKSRSLYL
401: ADSRIKNTCV PVKDIFIKLI GALGNMATLK YLLSKSSTPL KLSNPLHLHR SNNNFNRISK FLRALNSFAS GQFHCHSPNS RSFSTSPEYV AQDSDSSVAA
501: ALNLDSRVPA TVITGFLGSG KTTLLNHILT SQHGKRIAVI ENEFGEVDID GSLVASHSSS NEEILMVNNG CLCCTVRGDL VKMLLELVKN RRDRFDHIVI
601: ETTGLAKPGP VIETFCSDEL VSRHVKLDGV VTLVDSKHAL QHLNKVKPRF VSNEAVEQVA YADRIILNKI DLVTESELEV LTKRIKHING MAQIKKAKHG
701: VVDMDFVLGV GGYDLDRVDS EVQSEGSHCG HKHEDEHEHH KGHHHDHVHD SAVSSVSIVS EGTLDLDEVD DWLERLIEEN GDDLYRMKGV LSVSDSEQRY
801: VFQGVHSVLD GCPGKTWEPN EKRINKLVFI GRNLDETALR KGFKGCLCEE
001: MATLSTLEIA TTFLSFTAPR SSAAFNYRFS SAAVSVLSRP RATTVSVRTT PSFFYSPVVR RQRFSSVSAS ATQTEDSDVT TKIPPDNRIP ATIITGFLGS
101: GKTTLLNHIL TRDHGKRIAV IENEFGEVDI DGSLVASKSI GAEDIVMLNN GCLCCTVRGD LVRMIGELVN TKKGKFDHIV IETTGLANPA PIIQTFYAEE
201: EIFNDVKLDG VVTLVDAKHA RLHLDEVKPE GVVNEAVEQI AYADRIIVNK TDLVGEAELG SVVQRIKTIN SMAQMTRTKY GNVDLDYVLG IGGFDLERIE
301: SSVNEDDKGD HHDHDHDHHH DHNHDHDHHH HDGHDHHHHS HDHTHDPGVS SVSIVCEGSL DLEKANMWLG TLLMERSEDI YRMKGLLSVH TMEERFVFQG
401: VHDIFQGSPD RLWGREEERV NKIVFIGKNL NREELEKGFK ACLI
101: GKTTLLNHIL TRDHGKRIAV IENEFGEVDI DGSLVASKSI GAEDIVMLNN GCLCCTVRGD LVRMIGELVN TKKGKFDHIV IETTGLANPA PIIQTFYAEE
201: EIFNDVKLDG VVTLVDAKHA RLHLDEVKPE GVVNEAVEQI AYADRIIVNK TDLVGEAELG SVVQRIKTIN SMAQMTRTKY GNVDLDYVLG IGGFDLERIE
301: SSVNEDDKGD HHDHDHDHHH DHNHDHDHHH HDGHDHHHHS HDHTHDPGVS SVSIVCEGSL DLEKANMWLG TLLMERSEDI YRMKGLLSVH TMEERFVFQG
401: VHDIFQGSPD RLWGREEERV NKIVFIGKNL NREELEKGFK ACLI
Arabidopsis Description
PTAC17At1g80480 [Source:UniProtKB/TrEMBL;Acc:Q9M8L6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.