Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040769.1-P | Field mustard | cytosol | 82.0 | 82.83 |
| CDY32305 | Canola | cytosol | 88.0 | 80.73 |
| CDY61823 | Canola | cytosol | 88.0 | 80.73 |
| KRH39569 | Soybean | cytosol, plastid | 68.0 | 60.71 |
| VIT_05s0124g00450.t01 | Wine grape | plastid | 52.0 | 59.77 |
| KRH74384 | Soybean | cytosol, plastid | 64.0 | 56.14 |
| Solyc08g076580.2.1 | Tomato | cytosol | 56.0 | 49.56 |
| PGSC0003DMT400038358 | Potato | plastid | 50.0 | 46.73 |
| TraesCS1D01G197800.1 | Wheat | cytosol | 45.0 | 44.12 |
| TraesCS1B01G208900.1 | Wheat | cytosol | 45.0 | 44.12 |
| TraesCS1A01G193900.1 | Wheat | cytosol | 45.0 | 44.12 |
| Os10t0575950-01 | Rice | cytosol | 42.0 | 42.42 |
| Zm00001d030079_P001 | Maize | cytosol, nucleus, plastid | 38.0 | 41.76 |
| GSMUA_Achr5P14060_001 | Banana | nucleus | 46.0 | 41.44 |
| HORVU1Hr1G050750.1 | Barley | cytosol, mitochondrion, plasma membrane | 22.0 | 40.0 |
| OQU80353 | Sorghum | cytosol | 36.0 | 37.11 |
| KXG34154 | Sorghum | cytosol | 20.0 | 36.36 |
| EER94435 | Sorghum | cytosol | 42.0 | 34.71 |
| OQU76519 | Sorghum | extracellular | 32.0 | 22.38 |
| KXG30734 | Sorghum | extracellular | 31.0 | 19.5 |
Protein Annotations
| MapMan:35.1 | EntrezGene:840123 | ProteinID:AAG60169.1 | ProteinID:AEE31462.1 | ArrayExpress:AT1G32310 | EnsemblPlantsGene:AT1G32310 |
| RefSeq:AT1G32310 | TAIR:AT1G32310 | RefSeq:AT1G32310-TAIR-G | EnsemblPlants:AT1G32310.1 | TAIR:AT1G32310.1 | EMBL:AY086534 |
| EMBL:BT004179 | EMBL:BT005704 | GO:GO:0000003 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0003885 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0007049 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009555 | GO:GO:0009556 | GO:GO:0009987 |
| GO:GO:0010997 | GO:GO:0016020 | GO:GO:0016491 | GO:GO:0016614 | GO:GO:0019538 | GO:GO:0040007 |
| GO:GO:0040008 | GO:GO:0045732 | GO:GO:0046621 | GO:GO:0050660 | GO:GO:0055114 | RefSeq:NP_564394.1 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0007631 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR37387 | UniProt:Q9C613 | InterPro:SAMBA |
| UniParc:UPI000000C2C7 | SEG:seg | : | : | : | : |
Description
SAMBAProtein SAMBA [Source:UniProtKB/Swiss-Prot;Acc:Q9C613]
Coordinates
chr1:+:11653500..11654833
Molecular Weight (calculated)
10856.9 Da
IEP (calculated)
6.253
GRAVY (calculated)
-0.456
Length
100 amino acids
Sequence
(BLAST)
(BLAST)
1: MNGASPAHSL VSTTAVAGGG GSSGAAAGLD DFHFPPDIPS MQERKDEAMR VLKADLMTEL DKEVKSLEED SWMFEGPRSR IHLISRRGNF LKKGGEVKLW
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.