Factsheet for Solyc08g076580.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 4
plasma membrane 1
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g006490.2.1
Solyc01g009960.2.1
Solyc01g104270.2.1
Solyc02g079050.2.1
Solyc03g061590.2.1
Solyc03g113740.2.1
Solyc03g117430.2.1
Solyc05g056250.2.1
Solyc06g054670.1.1
Solyc06g059700.2.1
Solyc06g059710.2.1
Solyc06g059720.2.1
Solyc07g065050.2.1
Solyc08g022210.2.1
Solyc10g005510.2.1
Solyc10g045620.1.1
Solyc10g045630.1.1
Solyc11g069290.1.1
Solyc12g100200.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32310.1	Solyc01g009960.2.1	AT1G43800.1	20706207
AT1G32310.1	Solyc06g054670.1.1	AT1G43800.1	20706207
AT1G32310.1	Solyc06g059700.2.1	AT1G43800.1	20706207
AT1G32310.1	Solyc06g059710.2.1	AT1G43800.1	20706207
AT1G32310.1	Solyc06g059720.2.1	AT1G43800.1	20706207
AT1G32310.1	Solyc10g005510.2.1	AT1G79530.1	20706207
AT1G32310.1	Solyc03g117430.2.1	AT1G80480.1	20706207
AT1G32310.1	Solyc08g022210.2.1	AT2G05830.1	20706207
AT1G32310.1	Solyc03g061590.2.1	AT2G20000.1	20706207
AT1G32310.1	Solyc03g113740.2.1	AT3G48150.1	20706207
AT1G32310.1	Solyc02g079050.2.1	AT4G21530.1	20706207
AT1G32310.1	Solyc05g056250.2.1	AT4G26870.1	20706207
AT1G32310.1	Solyc01g006490.2.1	AT5G13030.1	20706207
AT1G32310.1	Solyc12g100200.1.1	AT5G13030.1	20706207
AT1G32310.1	Solyc01g104270.2.1	AT5G24690.1	20706207
AT1G32310.1	Solyc10g045620.1.1	AT5G24690.1	20706207
AT1G32310.1	Solyc10g045630.1.1	AT5G24690.1	20706207
AT1G32310.1	Solyc07g065050.2.1	AT5G55280.1	20706207
AT1G32310.1	Solyc11g069290.1.1	AT5G60540.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400038358	Potato	plastid	79.65	84.11
VIT_05s0124g00450.t01	Wine grape	plastid	48.67	63.22
Bra040769.1-P	Field mustard	cytosol	50.44	57.58
AT1G32310.1	Thale cress	cytosol	49.56	56.0
CDY61823	Canola	cytosol	49.56	51.38
CDY32305	Canola	cytosol	48.67	50.46
KRH39569	Soybean	cytosol, plastid	49.56	50.0
GSMUA_Achr5P14060_001	Banana	nucleus	47.79	48.65
KRH74384	Soybean	cytosol, plastid	47.79	47.37
Zm00001d030079_P001	Maize	cytosol, nucleus, plastid	38.05	47.25
Os10t0575950-01	Rice	cytosol	38.94	44.44
TraesCS1D01G197800.1	Wheat	cytosol	38.94	43.14
TraesCS1A01G193900.1	Wheat	cytosol	38.05	42.16
TraesCS1B01G208900.1	Wheat	cytosol	38.05	42.16
KXG34154	Sorghum	cytosol	20.35	41.82
OQU80353	Sorghum	cytosol	35.4	41.24
HORVU1Hr1G050750.1	Barley	cytosol, mitochondrion, plasma membrane	19.47	40.0
EER94435	Sorghum	cytosol	40.71	38.02
OQU76519	Sorghum	extracellular	26.55	20.98
KXG30734	Sorghum	extracellular	25.66	18.24

Protein Annotations

MapMan:35.1	GO:GO:0000003	GO:GO:0003674	GO:GO:0005488	GO:GO:0007049	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009555	GO:GO:0009556	GO:GO:0009987
GO:GO:0010997	GO:GO:0019538	GO:GO:0040007	GO:GO:0045732	GO:GO:0046621	UniProt:K4CN20
PANTHER:PTHR37387	InterPro:SAMBA	EnsemblPlantsGene:Solyc08g076580.2	EnsemblPlants:Solyc08g076580.2.1	UniParc:UPI0001E2461A	SEG:seg

Description

No Description!

Coordinates

chr8:+:60539826..60543166

Molecular Weight (calculated)

12256.6 Da

IEP (calculated)

10.251

GRAVY (calculated)

-0.483

Length

113 amino acids

Sequence
(BLAST)

001: MSTGSSLTSS PARSSSSTMA MIGGNVGPPS STAVDDFNFP VDLISVQDRK DEALQVLKSD LMASLNKEVK SLDEDSWMFD GPRSRIHRIS RPGRLHKHVE
101: VGKQKSKLAA TLK

Best Arabidopsis Sequence Match ( AT1G32310.1 )
(BLAST)

1: MNGASPAHSL VSTTAVAGGG GSSGAAAGLD DFHFPPDIPS MQERKDEAMR VLKADLMTEL DKEVKSLEED SWMFEGPRSR IHLISRRGNF LKKGGEVKLW

Arabidopsis Description

SAMBAProtein SAMBA [Source:UniProtKB/Swiss-Prot;Acc:Q9C613]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.