Factsheet for Solyc07g065050.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	cytosol, plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20363867
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g007880.2.1
Solyc04g081070.2.1
Solyc07g065050.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G55280.1	Solyc01g007880.2.1	AT1G75010.1	17304239
AT5G55280.1	Solyc04g081070.2.1	AT5G42480.1	16146521
AT5G55280.1	Solyc04g081070.2.1	AT5G42480.1	19453460
AT5G55280.1	Solyc07g065050.2.1	AT5G55280.1	16146521

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400057147	Potato	plastid	98.57	98.57
VIT_19s0090g01320.t01	Wine grape	cytosol	75.66	87.81
Bra035565.1-P	Field mustard	cytosol	74.7	86.23
HORVU2Hr1G109020.1	Barley	cytosol	51.07	81.68
Bra002918.1-P	Field mustard	plastid	79.0	80.54
CDY17316	Canola	plastid	78.76	80.29
CDY19897	Canola	plastid	78.76	80.29
CDY20776	Canola	plastid	78.76	77.65
CDY06595	Canola	plastid	78.52	77.41
KRG98668	Soybean	plastid	76.13	76.5
KRH46262	Soybean	plastid	75.18	75.54
KRH73828	Soybean	plastid	75.18	75.36
KRH14302	Soybean	plastid	74.94	75.12
AT5G55280.1	Thale cress	plastid	77.57	75.06
TraesCS2D01G488700.1	Wheat	plastid	72.08	74.94
TraesCS2A01G488400.1	Wheat	plastid	71.84	74.69
TraesCS2B01G516000.1	Wheat	plastid	71.84	74.69
GSMUA_Achr7P06230_001	Banana	plastid	73.03	73.91
Os04t0665400-01	Rice	plastid	70.88	73.88
EES13042	Sorghum	plastid	70.64	73.09
Zm00001d001939_P003	Maize	plastid	69.45	71.85
Solyc12g014560.1.1	Tomato	plastid	79.0	70.88
HORVU0Hr1G018830.1	Barley	cytosol, plastid	73.27	69.46
Zm00001d013131_P001	Maize	cytosol, nucleus, plastid	27.45	42.44
Solyc09g009430.2.1	Tomato	plastid	47.49	41.63
Solyc10g083490.1.1	Tomato	plastid	47.02	41.04

Protein Annotations

MapMan:13.6.1.1.1	Gene3D:3.40.50.1440	InterPro:Cell_div_FtsZ	InterPro:Cell_div_FtsZ_CS	UniProt:D3J5I7	InterPro:FtsZ_C
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874
GO:GO:0007017	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0010020
GO:GO:0016043	GO:GO:0016787	EMBL:GQ847858	InterPro:IPR036525	HAMAP:MF_00909	PFAM:PF00091
PFAM:PF12327	PRINTS:PR00423	ScanProsite:PS00227	ScanProsite:PS01134	ScanProsite:PS01135	PANTHER:PTHR30314
PANTHER:PTHR30314:SF12	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	EnsemblPlantsGene:Solyc07g065050.2
EnsemblPlants:Solyc07g065050.2.1	TIGRFAMs:TIGR00065	InterPro:Tub_FtsZ_C	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_CS
InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI0001C30870	SEG:seg	:	:	:

Description

Plastid-dividing ring protein [Source:UniProtKB/TrEMBL;Acc:D3J5I7]

Coordinates

chr7:-:66975082..66981446

Molecular Weight (calculated)

43984.6 Da

IEP (calculated)

6.311

GRAVY (calculated)

0.030

Length

419 amino acids

Sequence
(BLAST)

001: MAILGLSNPA ELASSPSSSL AFSHRLHSSF IPKQCFFTGV RRKSFCRPQR FSISSSFTPM DSAKIKVVGV GGGGNNAVNR MIGSGLQGVD FYAINTDAQA
101: LVQSAAENPL QIGELLTRGL GTGGNPLLGE QAAEESKEAI ANSLKGSDMV FITAGMGGGT GSGAAPVVAQ IAKEAGYLTV GVVTYPFSFE GRKRSVQALE
201: AIEKLQRNVD TLIVIPNDRL LDIADEQTPL QDAFLLADDV LRQGVQGISD IITIPGLVNV DFADVKAVMK DSGTAMLGVG VSSSKNRAEE AAEQATLAPL
301: IGSSIQSATG VVYNITGGKD ITLQEVNRVS QVVTSLADPS ANIIFGAVVD ERYNGEIHVT IIATGFTQSF QKTLLSDPRG AKLIEKGAGI KENMASPVTL
401: RSSNTPSTTS RTPTRRLFF

Best Arabidopsis Sequence Match ( AT5G55280.1 )
(BLAST)

001: MAIIPLAQLN ELTISSSSSS FLTKSISSHS LHSSCICASS RISQFRGGFS KRRSDSTRSK SMRLRCSFSP MESARIKVIG VGGGGNNAVN RMISSGLQSV
101: DFYAINTDSQ ALLQSSAENP LQIGELLTRG LGTGGNPLLG EQAAEESKDA IANALKGSDL VFITAGMGGG TGSGAAPVVA QISKDAGYLT VGVVTYPFSF
201: EGRKRSLQAL EAIEKLQKNV DTLIVIPNDR LLDIADEQTP LQDAFLLADD VLRQGVQGIS DIITIPGLVN VDFADVKAVM KDSGTAMLGV GVSSSKNRAE
301: EAAEQATLAP LIGSSIQSAT GVVYNITGGK DITLQEVNRV SQVVTSLADP SANIIFGAVV DDRYTGEIHV TIIATGFSQS FQKTLLTDPR AAKLLDKMGS
401: SGQQENKGMS LPHQKQSPST ISTKSSSPRR LFF

Arabidopsis Description

FTSZ1Cell division protein FtsZ homolog 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q42545]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.