Factsheet for VIT_19s0090g01320.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0010g02140.t01
VIT_02s0033g00060.t01
VIT_19s0090g01320.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G55280.1	VIT_01s0010g02140.t01	AT1G75010.1	17304239
AT5G55280.1	VIT_02s0033g00060.t01	AT5G42480.1	16146521
AT5G55280.1	VIT_02s0033g00060.t01	AT5G42480.1	19453460
AT5G55280.1	VIT_19s0090g01320.t01	AT5G55280.1	16146521

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035565.1-P	Field mustard	cytosol	88.92	88.43
HORVU2Hr1G109020.1	Barley	cytosol	59.28	81.68
KRG98668	Soybean	plastid	89.75	77.7
Bra002918.1-P	Field mustard	plastid	88.09	77.37
CDY17316	Canola	plastid	88.09	77.37
CDY19897	Canola	plastid	87.81	77.13
KRH46262	Soybean	plastid	88.37	76.5
CDY06595	Canola	plastid	89.2	75.76
CDY20776	Canola	plastid	89.2	75.76
Solyc07g065050.2.1	Tomato	plastid	87.81	75.66
PGSC0003DMT400057147	Potato	plastid	87.81	75.66
AT5G55280.1	Thale cress	plastid	90.03	75.06
GSMUA_Achr7P06230_001	Banana	plastid	85.87	74.88
KRH14302	Soybean	plastid	86.15	74.4
TraesCS2A01G488400.1	Wheat	plastid	82.83	74.19
TraesCS2B01G516000.1	Wheat	plastid	82.83	74.19
KRH73828	Soybean	plastid	85.87	74.16
TraesCS2D01G488700.1	Wheat	plastid	82.27	73.7
Os04t0665400-01	Rice	plastid	81.99	73.63
EES13042	Sorghum	plastid	82.27	73.33
Zm00001d001939_P003	Maize	plastid	80.89	72.1
HORVU0Hr1G018830.1	Barley	cytosol, plastid	82.83	67.65
Zm00001d013131_P001	Maize	cytosol, nucleus, plastid	31.58	42.07
VIT_08s0007g03390.t01	Wine grape	plastid	51.52	38.27

Protein Annotations

EntrezGene:100243513	wikigene:100243513	MapMan:13.6.1.1.1	Gene3D:3.40.50.1440	ProteinID:CBI26709	ProteinID:CBI26709.3
InterPro:Cell_div_FtsZ	InterPro:Cell_div_FtsZ_CS	UniProt:D7T850	EMBL:FN595751	InterPro:FtsZ_C	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0007017
GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0010020	GO:GO:0016043
GO:GO:0016787	InterPro:IPR036525	EntrezGene:LOC100243513	wikigene:LOC100243513	HAMAP:MF_00909	PFAM:PF00091
PFAM:PF12327	PRINTS:PR00423	ScanProsite:PS00227	ScanProsite:PS01134	ScanProsite:PS01135	PANTHER:PTHR30314
PANTHER:PTHR30314:SF12	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	TIGR:TC64069
TIGRFAMs:TIGR00065	InterPro:Tub_FtsZ_C	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase
UniParc:UPI0001BE2C71	ArrayExpress:VIT_19s0090g01320	EnsemblPlantsGene:VIT_19s0090g01320	EnsemblPlants:VIT_19s0090g01320.t01	unigene:Vvi.23868	RefSeq:XP_002276623
RefSeq:XP_002276623.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr19:-:7386286..7390719

Molecular Weight (calculated)

37466.9 Da

IEP (calculated)

4.808

GRAVY (calculated)

0.083

Length

361 amino acids

Sequence
(BLAST)

001: MESAKIKVVG VGGGGNNAVN RMIGSGLQGV DFYAINTDSQ ALLHSAASNP LQIGELLTRG LGTGGNPLLG EQAAEESKEA IANALKGSDL VFITAGMGGG
101: TGSGAAPVVA QISKEAGYLT VGVVTYPFSF EGRKRSLQAL EAIEKLQKNV DTLIVIPNDR LLDIADEQTP LQDAFLLADD VLRQGVQGIS DIITIPGLVN
201: VDFADVKAVM KDSGTAMLGV GVSSSKNRAE EAAEQATLAP LIGSSIQSAT GVVYNITGGK DITLQEVNRV SQVVTSLADP SANIIFGAVV DDRYNGEIHV
301: TIIATGFSQS FQKILLTDPK AAKLVDRVAG GQENKGLPIP LKSSNSPPAV PSRLPSRKLF F

Best Arabidopsis Sequence Match ( AT5G55280.1 )
(BLAST)

001: MAIIPLAQLN ELTISSSSSS FLTKSISSHS LHSSCICASS RISQFRGGFS KRRSDSTRSK SMRLRCSFSP MESARIKVIG VGGGGNNAVN RMISSGLQSV
101: DFYAINTDSQ ALLQSSAENP LQIGELLTRG LGTGGNPLLG EQAAEESKDA IANALKGSDL VFITAGMGGG TGSGAAPVVA QISKDAGYLT VGVVTYPFSF
201: EGRKRSLQAL EAIEKLQKNV DTLIVIPNDR LLDIADEQTP LQDAFLLADD VLRQGVQGIS DIITIPGLVN VDFADVKAVM KDSGTAMLGV GVSSSKNRAE
301: EAAEQATLAP LIGSSIQSAT GVVYNITGGK DITLQEVNRV SQVVTSLADP SANIIFGAVV DDRYTGEIHV TIIATGFSQS FQKTLLTDPR AAKLLDKMGS
401: SGQQENKGMS LPHQKQSPST ISTKSSSPRR LFF

Arabidopsis Description

FTSZ1Cell division protein FtsZ homolog 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q42545]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.