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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 10
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:cytosol
iPSORT:plastid
MultiLoc:plastid
Plant-mPloc:cytosol, plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
EES06197
EES13042
OQU89910

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G55280.1 OQU89910 AT1G75010.1 17304239
AT5G55280.1 EES06197 AT5G42480.1 16146521
AT5G55280.1 EES06197 AT5G42480.1 19453460
AT5G55280.1 EES13042 AT5G55280.1 16146521
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d001939_P003 Maize plastid 96.3 96.3
Os04t0665400-01 Rice plastid 88.64 89.3
TraesCS2D01G488700.1 Wheat plastid 87.9 88.34
TraesCS2A01G488400.1 Wheat plastid 87.9 88.34
TraesCS2B01G516000.1 Wheat plastid 87.16 87.59
VIT_19s0090g01320.t01 Wine grape cytosol 73.33 82.27
Bra035565.1-P Field mustard cytosol 72.1 80.44
HORVU0Hr1G018830.1 Barley cytosol, plastid 86.17 78.96
GSMUA_Achr7P06230_001 Banana plastid 76.79 75.12
Bra002918.1-P Field mustard plastid 73.83 72.75
CDY19897 Canola plastid 73.83 72.75
CDY17316 Canola plastid 73.83 72.75
CDY20776 Canola plastid 75.06 71.53
CDY06595 Canola plastid 74.57 71.06
Solyc07g065050.2.1 Tomato plastid 73.09 70.64
KRH73828 Soybean plastid 72.84 70.57
PGSC0003DMT400057147 Potato plastid 72.84 70.41
KRH14302 Soybean plastid 72.59 70.33
KRG98668 Soybean plastid 71.36 69.3
AT5G55280.1 Thale cress plastid 74.07 69.28
KRH46262 Soybean plastid 70.62 68.59
Solyc12g014560.1.1 Tomato plastid 66.67 57.82
PGSC0003DMT400033429 Potato plastid 60.99 56.52
EES11689 Sorghum plastid 46.91 41.21
KXG22108 Sorghum plastid 44.94 38.64
Protein Annotations
MapMan:13.6.1.1.1Gene3D:3.40.50.1440EntrezGene:8082560UniProt:C5Y9Z4InterPro:Cell_div_FtsZInterPro:Cell_div_FtsZ_CS
EnsemblPlants:EES13042ProteinID:EES13042ProteinID:EES13042.1InterPro:FtsZ_CGO:GO:0000166GO:GO:0003674
GO:GO:0003824GO:GO:0003924GO:GO:0005488GO:GO:0005515GO:GO:0005525GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005856GO:GO:0005874GO:GO:0007017
GO:GO:0008150GO:GO:0009507GO:GO:0009535GO:GO:0009536GO:GO:0009570GO:GO:0009579
GO:GO:0009628GO:GO:0009637GO:GO:0009658GO:GO:0009902GO:GO:0009987GO:GO:0010020
GO:GO:0016020GO:GO:0016043GO:GO:0016787GO:GO:0042802GO:GO:0043572GO:GO:0043621
InterPro:IPR036525HAMAP:MF_00909PFAM:PF00091PFAM:PF12327PRINTS:PR00423ScanProsite:PS00227
ScanProsite:PS01134ScanProsite:PS01135PANTHER:PTHR30314PANTHER:PTHR30314:SF12SMART:SM00864SMART:SM00865
EnsemblPlantsGene:SORBI_3006G255900SUPFAM:SSF52490SUPFAM:SSF55307unigene:Sbi.10827TIGRFAMs:TIGR00065InterPro:Tub_FtsZ_C
InterPro:Tubulin/FtsZ_2-layer-sand-domInterPro:Tubulin/FtsZ_GTPase_sfInterPro:Tubulin_CSInterPro:Tubulin_FtsZ_GTPaseUniParc:UPI0001A87548RefSeq:XP_002448714.1
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr6:-:59290516..59293596
Molecular Weight (calculated)
42255.5 Da
IEP (calculated)
6.969
GRAVY (calculated)
0.044
Length
405 amino acids
Sequence
(BLAST)
001: MASSAAASSS ASALVRLPGP GHLRALPRSG WRDHRRPRRA IVRCSFAPVE TARIKVVGVG GGGNNAVNRM IGSGLQGIEF YAINTDSQAL INSQAQYPLQ
101: IGEQLTRGLG TGGNPNLGEQ AAEESREAIA TALRDSDLVF ITAGMGGGTG SGAAPVVAQI SKEAGYLTVG VVTYPFSFEG RKRSLQALEA LEKLEKSVDT
201: LIVIPNDKLL DVADENMPLQ DAFLLADDVL RQGVQGISDI ITIPGLVNVD FADVKAVMKN SGTAMLGVGV SSSKNRAQEA AEQATLAPLI GSSIEAATGV
301: VYNITGGKDI TLQEVNKVSQ IVTSLADPSA NIIFGAVVDD RYTGEIHVTI IATGFPQSFQ KSLLADPKGA RIVESKEKAA TLAHKAAVAA VQPVPASAWS
401: RRLFS
Best Arabidopsis Sequence Match ( AT5G55280.1 )
(BLAST)
001: MAIIPLAQLN ELTISSSSSS FLTKSISSHS LHSSCICASS RISQFRGGFS KRRSDSTRSK SMRLRCSFSP MESARIKVIG VGGGGNNAVN RMISSGLQSV
101: DFYAINTDSQ ALLQSSAENP LQIGELLTRG LGTGGNPLLG EQAAEESKDA IANALKGSDL VFITAGMGGG TGSGAAPVVA QISKDAGYLT VGVVTYPFSF
201: EGRKRSLQAL EAIEKLQKNV DTLIVIPNDR LLDIADEQTP LQDAFLLADD VLRQGVQGIS DIITIPGLVN VDFADVKAVM KDSGTAMLGV GVSSSKNRAE
301: EAAEQATLAP LIGSSIQSAT GVVYNITGGK DITLQEVNRV SQVVTSLADP SANIIFGAVV DDRYTGEIHV TIIATGFSQS FQKTLLTDPR AAKLLDKMGS
401: SGQQENKGMS LPHQKQSPST ISTKSSSPRR LFF
Arabidopsis Description
FTSZ1Cell division protein FtsZ homolog 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q42545]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.