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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 9
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, plastid
BaCelLo:plastid
EpiLoc:cytosol
iPSORT:plastid
MultiLoc:plastid
Plant-mPloc:cytosol, plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
 plastid: 17710559
plastid: 15069638
plastid: 17189339
gfp PMID: 17710559 doi
LF Primavesi, H Wu, EA Mudd, A Day, HD Jones
Rothamsted Research, Harpenden, Hertfordshire, UK.
msms PMID: 15069638 doi
N Tanaka, M Fujita, H Handa, S Murayama, M Uemura, Y Kawamura, T Mitsui, S Mikami, Y Tozawa, T Yoshinaga, S Komatsu
Department of Molecular Genetics, National Institute of Agrobiological Sciences, 305-8602, Tsukuba, Japan.
msms PMID: 17189339 doi
T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky
Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.
PPI

Inferred distinct locusB in Crop

locusBlocations
Os02t0122400-01
Os04t0665400-01
Os09t0555600-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G55280.1 Os09t0555600-01 AT1G75010.1 17304239
AT5G55280.1 Os02t0122400-01 AT5G42480.1 16146521
AT5G55280.1 Os02t0122400-01 AT5G42480.1 19453460
AT5G55280.1 Os04t0665400-01 AT5G55280.1 16146521
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EES13042 Sorghum plastid 89.3 88.64
Zm00001d001939_P003 Maize plastid 88.31 87.65
TraesCS2A01G488400.1 Wheat plastid 87.31 87.1
TraesCS2D01G488700.1 Wheat plastid 87.06 86.85
TraesCS2B01G516000.1 Wheat plastid 86.32 86.1
VIT_19s0090g01320.t01 Wine grape cytosol 73.63 81.99
Bra035565.1-P Field mustard cytosol 73.38 81.27
HORVU0Hr1G018830.1 Barley cytosol, plastid 85.07 77.38
GSMUA_Achr7P06230_001 Banana plastid 76.37 74.15
CDY17316 Canola plastid 74.88 73.24
CDY19897 Canola plastid 74.88 73.24
Bra002918.1-P Field mustard plastid 74.63 72.99
CDY20776 Canola plastid 75.87 71.76
CDY06595 Canola plastid 75.62 71.53
PGSC0003DMT400057147 Potato plastid 73.88 70.88
Solyc07g065050.2.1 Tomato plastid 73.88 70.88
KRH73828 Soybean plastid 73.38 70.57
KRG98668 Soybean plastid 72.64 70.02
AT5G55280.1 Thale cress plastid 75.37 69.98
KRH46262 Soybean plastid 72.39 69.78
KRH14302 Soybean plastid 71.89 69.14
Solyc12g014560.1.1 Tomato plastid 68.91 59.31
PGSC0003DMT400033429 Potato plastid 62.44 57.44
Os03t0646100-01 Rice plastid 48.26 42.92
Os05t0443800-01 Rice plastid 46.02 39.19
Protein Annotations
MapMan:13.6.1.1.1Gene3D:3.40.50.1440EntrezGene:4337316EMBL:AK105869UniProt:B7EYF6ProteinID:BAS91500.1
InterPro:Cell_div_FtsZInterPro:Cell_div_FtsZ_CSProteinID:EEE61856.1InterPro:FtsZ_CGO:GO:0000166GO:GO:0003674
GO:GO:0003824GO:GO:0003924GO:GO:0005488GO:GO:0005515GO:GO:0005525GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005856GO:GO:0005874GO:GO:0007017
GO:GO:0008150GO:GO:0009535GO:GO:0009536GO:GO:0009570GO:GO:0009579GO:GO:0009628
GO:GO:0009637GO:GO:0009902GO:GO:0009987GO:GO:0010020GO:GO:0016020GO:GO:0016043
GO:GO:0016787GO:GO:0042802GO:GO:0043621InterPro:IPR036525HAMAP:MF_00909EnsemblPlantsGene:Os04g0665400
EnsemblPlants:Os04t0665400-01PFAM:PF00091PFAM:PF12327PRINTS:PR00423ScanProsite:PS00227ScanProsite:PS01134
ScanProsite:PS01135PANTHER:PTHR30314PANTHER:PTHR30314:SF12SMART:SM00864SMART:SM00865SUPFAM:SSF52490
SUPFAM:SSF55307TIGRFAMs:TIGR00065InterPro:Tub_FtsZ_CInterPro:Tubulin/FtsZ_2-layer-sand-domInterPro:Tubulin/FtsZ_GTPase_sfInterPro:Tubulin_CS
InterPro:Tubulin_FtsZ_GTPaseUniParc:UPI000188AEB7RefSeq:XP_015633950.1SEG:seg::
Description
plastid division protein FtsZ1Similar to H1005F08.7 protein. (Os04t0665400-01);Similar to H1005F08.7 protein. (Os04t0665400-02);Similar to H1005F08.7 protein. (Os04t0665400-03)
Coordinates
chr4:-:33963881..33966703
Molecular Weight (calculated)
41795.9 Da
IEP (calculated)
5.849
GRAVY (calculated)
0.069
Length
402 amino acids
Sequence
(BLAST)
001: MASAACSSSA SALVRLTGPI HLCSAPPRGS ARRRHASVRC SFAPVETARI KVVGVGGGGN NAVNRMIGSG LQGIEFYAIN TDSQALLNSQ AQYPLQIGEQ
101: LTRGLGTGGN PNLGEQAAEE SKEAIANALK DSDLVFITAG MGGGTGSGAA PVVAQISKEA GYLTVGVVTY PFSFEGRKRS LQALEALEKL ERSVDTLIVI
201: PNDRLLDVVD ENTPLQDAFL LADDVLRQGV QGISDIITIP GLVNVDFADV KAVMKNSGTA MLGVGVSSSK NRAQEAAEQA TLAPLIGSSI EAATGVVYNI
301: TGGKDITLQE VNKVSQIVTS LADPSANIIF GAVVDDRYTG EIHVTIIATG FPQSFQKSLL ADPKGARIME AKEKAANLTY KAVAAATVQP APAATWSRRL
401: FS
Best Arabidopsis Sequence Match ( AT5G55280.1 )
(BLAST)
001: MAIIPLAQLN ELTISSSSSS FLTKSISSHS LHSSCICASS RISQFRGGFS KRRSDSTRSK SMRLRCSFSP MESARIKVIG VGGGGNNAVN RMISSGLQSV
101: DFYAINTDSQ ALLQSSAENP LQIGELLTRG LGTGGNPLLG EQAAEESKDA IANALKGSDL VFITAGMGGG TGSGAAPVVA QISKDAGYLT VGVVTYPFSF
201: EGRKRSLQAL EAIEKLQKNV DTLIVIPNDR LLDIADEQTP LQDAFLLADD VLRQGVQGIS DIITIPGLVN VDFADVKAVM KDSGTAMLGV GVSSSKNRAE
301: EAAEQATLAP LIGSSIQSAT GVVYNITGGK DITLQEVNRV SQVVTSLADP SANIIFGAVV DDRYTGEIHV TIIATGFSQS FQKTLLTDPR AAKLLDKMGS
401: SGQQENKGMS LPHQKQSPST ISTKSSSPRR LFF
Arabidopsis Description
FTSZ1Cell division protein FtsZ homolog 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q42545]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.