Factsheet for Zm00001d001939_P003

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22065420
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d001939_P003
Zm00001d013131_P001
Zm00001d021407_P001
Zm00001d053923_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G55280.1	Zm00001d021407_P001	AT1G75010.1	17304239
AT5G55280.1	Zm00001d053923_P003	AT5G42480.1	16146521
AT5G55280.1	Zm00001d053923_P003	AT5G42480.1	19453460
AT5G55280.1	Zm00001d001939_P003	AT5G55280.1	16146521
AT5G55280.1	Zm00001d013131_P001	AT5G55280.1	16146521

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES13042	Sorghum	plastid	96.3	96.3
Os04t0665400-01	Rice	plastid	87.65	88.31
TraesCS2D01G488700.1	Wheat	plastid	86.42	86.85
TraesCS2A01G488400.1	Wheat	plastid	86.42	86.85
TraesCS2B01G516000.1	Wheat	plastid	85.43	85.86
VIT_19s0090g01320.t01	Wine grape	cytosol	72.1	80.89
Bra035565.1-P	Field mustard	cytosol	71.36	79.61
HORVU0Hr1G018830.1	Barley	cytosol, plastid	84.44	77.38
GSMUA_Achr7P06230_001	Banana	plastid	76.3	74.64
CDY17316	Canola	plastid	73.33	72.26
CDY19897	Canola	plastid	73.33	72.26
Bra002918.1-P	Field mustard	plastid	72.84	71.78
CDY06595	Canola	plastid	74.07	70.59
CDY20776	Canola	plastid	74.07	70.59
KRH73828	Soybean	plastid	72.1	69.86
Solyc07g065050.2.1	Tomato	plastid	71.85	69.45
KRH14302	Soybean	plastid	71.6	69.38
PGSC0003DMT400057147	Potato	plastid	71.6	69.21
AT5G55280.1	Thale cress	plastid	73.33	68.59
KRH46262	Soybean	plastid	70.37	68.35
KRG98668	Soybean	plastid	70.37	68.35
Solyc12g014560.1.1	Tomato	plastid	66.42	57.6
PGSC0003DMT400033429	Potato	plastid	60.74	56.29
Zm00001d013131_P001	Maize	cytosol, nucleus, plastid	30.62	45.76
Zm00001d010135_P003	Maize	plastid	47.65	37.48
Zm00001d026669_P001	Maize	plastid	46.67	36.07

Protein Annotations

MapMan:13.6.1.1.1	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	UniProt:B4FT34	EMBL:BT040272	InterPro:Cell_div_FtsZ
InterPro:Cell_div_FtsZ_CS	InterPro:FtsZ_C	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005856	GO:GO:0005874	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016787
GO:GO:0051301	InterPro:IPR036525	InterPro:IPR037103	HAMAP:MF_00909	ProteinID:ONM12529.1	PFAM:PF00091
PFAM:PF12327	PRINTS:PR00423	ScanProsite:PS00227	ScanProsite:PS01134	ScanProsite:PS01135	PANTHER:PTHR30314
PANTHER:PTHR30314:SF12	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	TIGRFAMs:TIGR00065
InterPro:Tub_FtsZ_C	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase
UniParc:UPI00017B7F80	EnsemblPlantsGene:Zm00001d001939	EnsemblPlants:Zm00001d001939_P003	EnsemblPlants:Zm00001d001939_T003	SEG:seg	:

Description

Cell division protein FtsZ homolog 1 chloroplastic

Coordinates

chr2:+:3192071..3195791

Molecular Weight (calculated)

42197.3 Da

IEP (calculated)

6.969

GRAVY (calculated)

0.020

Length

405 amino acids

Sequence
(BLAST)

001: MASSAAAASS ASALFRLPGS GHLRAPPRSG WRDHRRSRRA TVRCSFAPVE TARIKVVGVG GGGNNAVNRM IGSGLQGIEF YAINTDSQAL INSQAQYPLQ
101: IGEQLTRGLG AGGNPNLGEQ AAEESRETIA TALRDSDLVF ITAGMGGGTG SGAAPVVAQI SKEAGYLTVG VVTYPFSFEG RKRSVQALEA LEKLEKSVDT
201: LIVIPNDKLL DVADENMPLQ DAFLLADDVL RQGVQGISDI ITIPGLVNVD FADVKAVMKN SGTAMLGVGV SSSKNRAQEA AEQATLAPLI GSSIEAATGV
301: VYNITGGKDI TLQEVNKVSQ IVTSLADPSA NIIFGAVVDD RYTGEIHVTI IATGFPQSFQ KSLLADPKGA RIVESKEKAA TLAHKAAAAA VQPVPASAWS
401: RRLFS

Best Arabidopsis Sequence Match ( AT5G55280.1 )
(BLAST)

001: MAIIPLAQLN ELTISSSSSS FLTKSISSHS LHSSCICASS RISQFRGGFS KRRSDSTRSK SMRLRCSFSP MESARIKVIG VGGGGNNAVN RMISSGLQSV
101: DFYAINTDSQ ALLQSSAENP LQIGELLTRG LGTGGNPLLG EQAAEESKDA IANALKGSDL VFITAGMGGG TGSGAAPVVA QISKDAGYLT VGVVTYPFSF
201: EGRKRSLQAL EAIEKLQKNV DTLIVIPNDR LLDIADEQTP LQDAFLLADD VLRQGVQGIS DIITIPGLVN VDFADVKAVM KDSGTAMLGV GVSSSKNRAE
301: EAAEQATLAP LIGSSIQSAT GVVYNITGGK DITLQEVNRV SQVVTSLADP SANIIFGAVV DDRYTGEIHV TIIATGFSQS FQKTLLTDPR AAKLLDKMGS
401: SGQQENKGMS LPHQKQSPST ISTKSSSPRR LFF

Arabidopsis Description

FTSZ1Cell division protein FtsZ homolog 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q42545]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.