Factsheet for Zm00001d053923_P003

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d001939_P003
Zm00001d013131_P001
Zm00001d021407_P001
Zm00001d053923_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42480.1	Zm00001d021407_P001	AT1G75010.1	19453460
AT5G42480.1	Zm00001d053923_P003	AT5G42480.1	16146521
AT5G42480.1	Zm00001d001939_P003	AT5G55280.1	16146521
AT5G42480.1	Zm00001d013131_P001	AT5G55280.1	16146521
AT5G42480.1	Zm00001d001939_P003	AT5G55280.1	19453460
AT5G42480.1	Zm00001d013131_P001	AT5G55280.1	19453460

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES06197	Sorghum	plastid	68.2	89.5
Os02t0122400-01	Rice	plastid	59.4	77.24
TraesCSU01G117700.1	Wheat	plastid	58.4	76.04
TraesCS6B01G089500.2	Wheat	plastid	57.6	75.39
TraesCS6A01G066200.3	Wheat	plastid	57.8	74.87
HORVU6Hr1G012020.11	Barley	nucleus	59.5	72.3
VIT_02s0033g00060.t01	Wine grape	mitochondrion	41.2	51.69
Solyc04g081070.2.1	Tomato	plastid	40.1	48.96
PGSC0003DMT400009646	Potato	plastid	40.0	48.48
KRH17386	Soybean	plastid	37.9	47.73
GSMUA_Achr1P07790_001	Banana	endoplasmic reticulum, plasma membrane	40.7	46.41
KRH05905	Soybean	plastid	37.1	46.14
CDY61131	Canola	plastid	36.0	46.04
Bra033637.1-P	Field mustard	mitochondrion, plastid	36.0	45.98
CDY22390	Canola	mitochondrion, plastid	36.0	45.98
AT5G42480.1	Thale cress	plastid	35.4	44.19
Zm00001d001844_P001	Maize	plastid	16.1	20.12

Protein Annotations

Gene3D:1.10.246.60	EntrezGene:100281725	MapMan:13.6.1.2.5	MapMan:17.4.1.3.10	UniProt:A0A1D6QTI0	ProteinID:AQK60739.1
InterPro:DUF4101	GO:GO:0001731	GO:GO:0001732	GO:GO:0002183	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005852	GO:GO:0006412	GO:GO:0006413	GO:GO:0006446
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009658	GO:GO:0009706	GO:GO:0009941	GO:GO:0009987	GO:GO:0010020	GO:GO:0016020
GO:GO:0016043	GO:GO:0016282	GO:GO:0019538	GO:GO:0031357	GO:GO:0033290	GO:GO:0043621
InterPro:IPR023194	InterPro:IPR036869	InterPro:J_dom_sf	HAMAP:MF_03009	PFAM:PF08597	PFAM:PF13355
PANTHER:PTHR33925	PANTHER:PTHR33925:SF3	SUPFAM:SSF46565	UniParc:UPI000842819B	EnsemblPlantsGene:Zm00001d053923	EnsemblPlants:Zm00001d053923_P003
EnsemblPlants:Zm00001d053923_T003	InterPro:eIF3-like_dom_sf	InterPro:eIF3j	SEG:seg	:	:

Description

Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6 chloroplastic

Coordinates

chr4:-:243656217..243665866

Molecular Weight (calculated)

109928.0 Da

IEP (calculated)

4.697

GRAVY (calculated)

-0.381

Length

1000 amino acids

Sequence
(BLAST)

001: MEGVHSLLAR PNSAPFAFSP LPLRRSHRPP PPGPSTCRAA SRWADRLFAD FHLLPAAADP PAAASSSSSS PFVPIFPEAA DRALPLPVDF YKILGAEPHF
101: LGDGIRRAFE SRIAKPPQYG YSTEALVGRR QMLQIAHDTL TNQSSRTEYD RALSEDRDAA LTMDVAWDKV PGVLCVLQEA GEAQLVLATG EHLLQDRPPK
201: RFKQDVVLAM ALAYVDISRD AMAASPPDVI CCCEVLERAL KLLQEDGASN LAPELLAQID ETLEEITPRC VLELLALPTD EKHKNKRQEG LQGAKNILWS
301: VGRGGIATVG GGFSREAFMN EAFLQMTSAE QMDFFSKTPN SIPPEWFEIY SVALAHIAQA IASKRPQFIM MADELFEQLQ KFNIGSQYPY ENEMDLALER
401: ALCSLLVGDI CNCRMWLGID NESSSYRDPK NIEFVVNNSS MNEENDLLPG LCKLLETWLV SEVFPRSRDT RGTQFRLGDY YDDPKVLSYL ERMEGGGASH
501: LAAAAAIAKL GAQATAALGT VKSSALQAFS KVFPLTEQLD MSGKDIPSDD LDKSLEKLAQ GSVAGDAIHD SRNDALKIIS AGTLLALFAV LGLKCLPRNK
601: SLPALRGEYG SVAVVDSIDG PAADEEPLEI PRMDAKLAED IVRRWQSIKS KALGPEHTVT ALQEVLGGNM LKVWADRAAE IERHGWFWEY ALSGVTIDSI
701: TVSVDGRRAA VEATIEEVGR LTDVTDPKND DAYDTKYTAR SSETIDLNEG GSASLLTTSL RQTRSLLRLY PADSEEFQPV VPVVKAEPLK NQWADEDVEE
801: DDVKESWEEE EEEEKPKPAP VEKVAAKPST KAPAKKGKQQ ALTSAEEPDE PPLSPTSQKI RQQRLVEEAD FKSTTELFAK KGSEQKSLDT FIPKSESDFA
901: EYAELIANKL RPYEKSFHYM ALLKNVMRLS MTSLKGADAK DISSSVTAIA NEKIKAEKEA AAGKKKQGAK KKQLHIEKGD DDFIPGRGGG YDDPDEYDFM

Best Arabidopsis Sequence Match ( AT5G42480.1 )
(BLAST)

001: MEALSHVGIG LSPFQLCRLP PATTKLRRSH NTSTTICSAS KWADRLLSDF NFTSDSSSSS FATATTTATL VSPPPSIDRP ERHVPIPIDF YQVLGAQTHF
101: LTDGIRRAFE ARVSKPPQFG FSDDALISRR QILQAACETL SNPRSRREYN EGLLDDEEAT VITDVPWDKV PGALCVLQEG GETEIVLRVG EALLKERLPK
201: SFKQDVVLVM ALAFLDVSRD AMALDPPDFI TGYEFVEEAL KLLQEEGASS LAPDLRAQID ETLEEITPRY VLELLGLPLG DDYAAKRLNG LSGVRNILWS
301: VGGGGASALV GGLTREKFMN EAFLRMTAAE QVDLFVATPS NIPAESFEVY EVALALVAQA FIGKKPHLLQ DADKQFQQLQ QAKVMAMEIP AMLYDTRNNW
401: EIDFGLERGL CALLIGKVDE CRMWLGLDSE DSQYRNPAIV EFVLENSNRD DNDDLPGLCK LLETWLAGVV FPRFRDTKDK KFKLGDYYDD PMVLSYLERV
501: EVVQGSPLAA AAAMARIGAE HVKASAMQAL QKVFPSRYTD RNSAEPKDVQ ETVFSVDPVG NNVGRDGEPG VFIAEAVRPS ENFETNDYAI RAGVSESSVD
601: ETTVEMSVAD MLKEASVKIL AAGVAIGLIS LFSQKYFLKS SSSFQRKDMV SSMESDVATI GSVRADDSEA LPRMDARTAE NIVSKWQKIK SLAFGPDHRI
701: EMLPEVLDGR MLKIWTDRAA ETAQLGLVYD YTLLKLSVDS VTVSADGTRA LVEATLEESA CLSDLVHPEN NATDVRTYTT RYEVFWSKSG WKITEGSVLA
801: S

Arabidopsis Description

ARC6Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FIG9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.