Factsheet for TraesCS6A01G066200.3

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G488400.1
TraesCS2B01G516000.1
TraesCS2D01G488700.1
TraesCS5A01G356200.1
TraesCS5B01G358700.1
TraesCS5D01G365000.1
TraesCS6A01G066200.3
TraesCS6B01G089500.2
TraesCSU01G117700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42480.1	TraesCS5A01G356200.1	AT1G75010.1	19453460
AT5G42480.1	TraesCS5B01G358700.1	AT1G75010.1	19453460
AT5G42480.1	TraesCS5D01G365000.1	AT1G75010.1	19453460
AT5G42480.1	TraesCS6A01G066200.3	AT5G42480.1	16146521
AT5G42480.1	TraesCS6B01G089500.2	AT5G42480.1	16146521
AT5G42480.1	TraesCSU01G117700.1	AT5G42480.1	16146521
AT5G42480.1	TraesCS2A01G488400.1	AT5G55280.1	16146521
AT5G42480.1	TraesCS2B01G516000.1	AT5G55280.1	16146521
AT5G42480.1	TraesCS2D01G488700.1	AT5G55280.1	16146521
AT5G42480.1	TraesCS2A01G488400.1	AT5G55280.1	19453460
AT5G42480.1	TraesCS2B01G516000.1	AT5G55280.1	19453460
AT5G42480.1	TraesCS2D01G488700.1	AT5G55280.1	19453460

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G089500.2	Wheat	plastid	92.75	93.72
TraesCSU01G117700.1	Wheat	plastid	91.45	91.93
HORVU6Hr1G012020.11	Barley	nucleus	91.19	85.54
Os02t0122400-01	Rice	plastid	80.96	81.27
EES06197	Sorghum	plastid	78.63	79.66
Zm00001d053923_P003	Maize	plastid	74.87	57.8
VIT_02s0033g00060.t01	Wine grape	mitochondrion	55.57	53.83
Solyc04g081070.2.1	Tomato	plastid	52.46	49.45
PGSC0003DMT400009646	Potato	plastid	52.46	49.09
KRH17386	Soybean	plastid	50.39	48.99
CDY22390	Canola	mitochondrion, plastid	48.7	48.02
Bra033637.1-P	Field mustard	mitochondrion, plastid	48.7	48.02
CDY61131	Canola	plastid	48.32	47.7
KRH05905	Soybean	plastid	49.48	47.51
GSMUA_Achr1P07790_001	Banana	endoplasmic reticulum, plasma membrane	53.63	47.21
AT5G42480.1	Thale cress	plastid	47.8	46.07
TraesCS2A01G555400.1	Wheat	plastid	21.76	20.66

Protein Annotations

MapMan:13.6.1.2.5	InterPro:DUF4101	InterPro:DnaJ_domain	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0009507
GO:GO:0009536	GO:GO:0009658	GO:GO:0009706	GO:GO:0009941	GO:GO:0009987	GO:GO:0010020
GO:GO:0016020	GO:GO:0016043	GO:GO:0031357	GO:GO:0043621	InterPro:IPR001623	InterPro:IPR036869
InterPro:J_dom_sf	PFAM:PF13355	PFscan:PS50076	PANTHER:PTHR33925	PANTHER:PTHR33925:SF3	SUPFAM:SSF46565
EnsemblPlantsGene:TraesCS6A01G066200	EnsemblPlants:TraesCS6A01G066200.3	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6A:+:35478409..35483832

Molecular Weight (calculated)

85331.5 Da

IEP (calculated)

4.702

GRAVY (calculated)

-0.236

Length

772 amino acids

Sequence
(BLAST)

001: MEGLHNLLAR PNSAPLAFSP PRPRPRRRPP VACRAASRWA DRLFADFHLL PTAAAPEPPA AAPAGVSASP CVPLFPDAAD RSLPLQVDFY KVLGAEPHFL
101: SDGVRRAFEA RAAKPPQYGY NTDTLVGRRQ ILQLAHDTLT NQSSRTEYDR ALSEDRGMAL TLDVAWDKVP GVLCALQEAG EAQAVLAIGE HLLQDRPPKQ
201: FKQDVVLAMA LAYVDLSRDA MAASPPDVIR CCEVLERALK LLQEDGAINL APDLLSQIDE TLEEITPRCV LELLALPLDE KHQSKRQEGL RGVRNILWSV
301: GRGGIATVGG GFSREAYMNE AFLQMTSAEQ MDFFSKTPNS IPPEWFEIYS VALANVAQAI VSKRPELIMV ADDLFEQLQK FNIGSQYAYD NELDLVLERA
401: LCSLLVGDIS NCRIWLAIDN ESSPHRDPKI VEFIVNNSSI DHQENDLLPG LCKLLETWLV SEVFPRSRDT RGMQFTLGDY YDDPQVLSYL EMMEGGGASH
501: LAAAAAIAKL GAQATAALGT VKSSAIQAFN KIFPLIEQLD RSDMENPNDG PEESVNKFDQ KTIMGFDIRD SKNAALKIVS ASALFALMTV IGMKYLPRNK
601: VLPAIRSEHK SMTVANVVDS VDDDAPDEPI QIPRMDANLA EGIVRKWQSI KSKALGSDHS LESLQEVLDG NMLKVWRDRA AEIERKGWFW DYTLSDVAID
701: SITVSLDGRR ATVEATIEEA GQLTDATDPR NNDLYDTKYT TRYEMTFTGP GGWKITEGHA PALETWSWRT IA

Best Arabidopsis Sequence Match ( AT5G42480.1 )
(BLAST)

001: MEALSHVGIG LSPFQLCRLP PATTKLRRSH NTSTTICSAS KWADRLLSDF NFTSDSSSSS FATATTTATL VSPPPSIDRP ERHVPIPIDF YQVLGAQTHF
101: LTDGIRRAFE ARVSKPPQFG FSDDALISRR QILQAACETL SNPRSRREYN EGLLDDEEAT VITDVPWDKV PGALCVLQEG GETEIVLRVG EALLKERLPK
201: SFKQDVVLVM ALAFLDVSRD AMALDPPDFI TGYEFVEEAL KLLQEEGASS LAPDLRAQID ETLEEITPRY VLELLGLPLG DDYAAKRLNG LSGVRNILWS
301: VGGGGASALV GGLTREKFMN EAFLRMTAAE QVDLFVATPS NIPAESFEVY EVALALVAQA FIGKKPHLLQ DADKQFQQLQ QAKVMAMEIP AMLYDTRNNW
401: EIDFGLERGL CALLIGKVDE CRMWLGLDSE DSQYRNPAIV EFVLENSNRD DNDDLPGLCK LLETWLAGVV FPRFRDTKDK KFKLGDYYDD PMVLSYLERV
501: EVVQGSPLAA AAAMARIGAE HVKASAMQAL QKVFPSRYTD RNSAEPKDVQ ETVFSVDPVG NNVGRDGEPG VFIAEAVRPS ENFETNDYAI RAGVSESSVD
601: ETTVEMSVAD MLKEASVKIL AAGVAIGLIS LFSQKYFLKS SSSFQRKDMV SSMESDVATI GSVRADDSEA LPRMDARTAE NIVSKWQKIK SLAFGPDHRI
701: EMLPEVLDGR MLKIWTDRAA ETAQLGLVYD YTLLKLSVDS VTVSADGTRA LVEATLEESA CLSDLVHPEN NATDVRTYTT RYEVFWSKSG WKITEGSVLA
801: S

Arabidopsis Description

ARC6Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FIG9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.