Factsheet for Solyc04g081070.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g007880.2.1
Solyc04g081070.2.1
Solyc07g065050.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42480.1	Solyc01g007880.2.1	AT1G75010.1	19453460
AT5G42480.1	Solyc04g081070.2.1	AT5G42480.1	16146521
AT5G42480.1	Solyc07g065050.2.1	AT5G55280.1	16146521
AT5G42480.1	Solyc07g065050.2.1	AT5G55280.1	19453460

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009646	Potato	plastid	93.41	92.73
VIT_02s0033g00060.t01	Wine grape	mitochondrion	68.86	70.77
KRH17386	Soybean	plastid	61.05	62.97
KRH05905	Soybean	plastid	60.44	61.57
CDY61131	Canola	plastid	56.78	59.46
Bra033637.1-P	Field mustard	mitochondrion, plastid	56.78	59.39
CDY22390	Canola	mitochondrion, plastid	56.78	59.39
AT5G42480.1	Thale cress	plastid	57.02	58.3
EES06197	Sorghum	plastid	50.79	54.59
Os02t0122400-01	Rice	plastid	50.06	53.32
TraesCSU01G117700.1	Wheat	plastid	49.33	52.6
TraesCS6A01G066200.3	Wheat	plastid	49.45	52.46
GSMUA_Achr1P07790_001	Banana	endoplasmic reticulum, plasma membrane	55.56	51.88
TraesCS6B01G089500.2	Wheat	plastid	48.11	51.57
HORVU6Hr1G012020.11	Barley	nucleus	49.69	49.45
Zm00001d053923_P003	Maize	plastid	48.96	40.1
Solyc03g098610.2.1	Tomato	cytosol	19.17	18.92

Protein Annotations

MapMan:13.6.1.2.5	InterPro:DUF4101	UniProt:G8Z271	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0009507
GO:GO:0009536	GO:GO:0009658	GO:GO:0009706	GO:GO:0009941	GO:GO:0009987	GO:GO:0010020
GO:GO:0016020	GO:GO:0016043	GO:GO:0031357	GO:GO:0043621	EMBL:GQ261249	PFAM:PF13355
PANTHER:PTHR33925	PANTHER:PTHR33925:SF3	EnsemblPlantsGene:Solyc04g081070.2	EnsemblPlants:Solyc04g081070.2.1	UniParc:UPI000243C646	SEG:seg

Description

Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic [Source:Projected from Arabidopsis thaliana (AT5G42480) UniProtKB/Swiss-Prot;Acc:Q9FIG9]

Coordinates

chr4:-:65116390..65121191

Molecular Weight (calculated)

89724.8 Da

IEP (calculated)

4.577

GRAVY (calculated)

-0.205

Length

819 amino acids

Sequence
(BLAST)

001: MEALTHLSFG ICTARLSPPY QLAGGVGKKP PRLNAVTGGA SSVTGGTSSV PTNFSASKWA DRLLADFQFL PSTTTTSDSS DFQNSTSTTS VTTIPPPVAP
101: SDRHISMPID FYRVLGAEAH FLGDGIRRCY DARITKPPQY GYSQEALIGR RQILQAACET LADSTSRREY NQGLAQHEFD TILTPVPWDK VPGALCVLQE
201: AGETGVVLQI GESLLKERLP KSFKQDVVLA MALAYVDHSR DAMALSPPDF VQGCELLERA LKLLQEEGAS NLALDLQSQI DETLEEINPR YVLELLAFPL
301: GDEYRMKRVE ALQGVRNILW AVGGGGAAAI SGGFTREDFM NEAFLRMTAA EQVDLFVATP SNIPAESFEV YGVALALVAQ AFVGKKPHLI QDADNLFQQL
401: QQTKVTAYGS SVSVYTVREN REIDFALERG LCSLLVGEVD GCRSWLGLDS EDSPYRDPSI VTFVAEHSKD DNENDLLPGL CKLLETWLME VVFPRFRETE
501: DVTFKLGDYY DDPTVLRYLE RLEGGGASPL AAAAAIARIG AEATAVLDSV KASAIQALQK VFPAGDGEGS VRRYGDNEMN EFDIAKPFED LEELRDQNNF
601: ITTVGDPERK SSNYQEQDVI TDRIKDASLK IMCAGVAVGF FTLVGLKLSS FRHGSSVQHC ASATGSAIAS DVINVDTSAS PVENPLEVPR MDARLAESIV
701: RKWQNIKSQS LGTDHCLNRL SEVLDGQMLK IWTDRAREIA QHGWFWEYKL LNLAIDSVTV SADGRRATVE ATLEESASLT DVAHPEHNDS YSTTYTTRYD
801: MSWANSGWKI VEGAVLKSR

Best Arabidopsis Sequence Match ( AT5G42480.1 )
(BLAST)

001: MEALSHVGIG LSPFQLCRLP PATTKLRRSH NTSTTICSAS KWADRLLSDF NFTSDSSSSS FATATTTATL VSPPPSIDRP ERHVPIPIDF YQVLGAQTHF
101: LTDGIRRAFE ARVSKPPQFG FSDDALISRR QILQAACETL SNPRSRREYN EGLLDDEEAT VITDVPWDKV PGALCVLQEG GETEIVLRVG EALLKERLPK
201: SFKQDVVLVM ALAFLDVSRD AMALDPPDFI TGYEFVEEAL KLLQEEGASS LAPDLRAQID ETLEEITPRY VLELLGLPLG DDYAAKRLNG LSGVRNILWS
301: VGGGGASALV GGLTREKFMN EAFLRMTAAE QVDLFVATPS NIPAESFEVY EVALALVAQA FIGKKPHLLQ DADKQFQQLQ QAKVMAMEIP AMLYDTRNNW
401: EIDFGLERGL CALLIGKVDE CRMWLGLDSE DSQYRNPAIV EFVLENSNRD DNDDLPGLCK LLETWLAGVV FPRFRDTKDK KFKLGDYYDD PMVLSYLERV
501: EVVQGSPLAA AAAMARIGAE HVKASAMQAL QKVFPSRYTD RNSAEPKDVQ ETVFSVDPVG NNVGRDGEPG VFIAEAVRPS ENFETNDYAI RAGVSESSVD
601: ETTVEMSVAD MLKEASVKIL AAGVAIGLIS LFSQKYFLKS SSSFQRKDMV SSMESDVATI GSVRADDSEA LPRMDARTAE NIVSKWQKIK SLAFGPDHRI
701: EMLPEVLDGR MLKIWTDRAA ETAQLGLVYD YTLLKLSVDS VTVSADGTRA LVEATLEESA CLSDLVHPEN NATDVRTYTT RYEVFWSKSG WKITEGSVLA
801: S

Arabidopsis Description

ARC6Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FIG9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.