Factsheet for Solyc03g098610.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plastid 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g007880.2.1
Solyc03g098610.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G19180.1	Solyc01g007880.2.1	AT1G75010.1	19564892
AT3G19180.1	Solyc03g098610.2.1	AT3G19180.1	19564892

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400026299	Potato	cytosol	96.27	96.27
VIT_17s0053g00090.t01	Wine grape	plastid	60.0	60.44
HORVU6Hr1G028890.1	Barley	cytosol	6.14	57.3
HORVU7Hr1G022620.1	Barley	cytosol	6.02	56.18
HORVU5Hr1G017780.1	Barley	cytosol	6.02	56.18
HORVU1Hr1G043130.1	Barley	cytosol	5.9	55.06
KRH38887	Soybean	plastid	52.89	54.06
HORVU5Hr1G052680.1	Barley	cytosol	5.66	54.02
HORVU5Hr1G052700.1	Barley	cytosol	5.66	54.02
HORVU4Hr1G064930.1	Barley	cytosol	5.78	53.93
HORVU6Hr1G023350.1	Barley	cytosol	5.78	53.93
KRH09390	Soybean	plasma membrane, plastid	52.41	53.57
CDX92306	Canola	plasma membrane	51.93	53.54
Bra022392.1-P	Field mustard	plasma membrane, plastid	51.81	53.28
CDX99260	Canola	plastid	51.57	53.17
AT3G19180.1	Thale cress	plastid	52.41	53.11
HORVU2Hr1G119920.8	Barley	cytosol	46.27	52.97
GSMUA_Achr1P15150_001	Banana	plastid	50.48	50.73
EES13095	Sorghum	plastid	48.31	50.25
Zm00001d001844_P001	Maize	plastid	47.35	49.12
TraesCS2D01G559100.1	Wheat	plastid	47.95	48.89
TraesCS2A01G555400.1	Wheat	plastid	47.71	48.71
TraesCS2B01G588400.1	Wheat	plastid	47.83	48.36
GSMUA_Achr3P14180_001	Banana	mitochondrion	47.71	47.54
Solyc04g081070.2.1	Tomato	plastid	18.92	19.17
Os04t0675700-00	Rice	cytosol	2.77	17.69

Protein Annotations

MapMan:13.6.1.2.6	ncoils:Coil	InterPro:DUF4101	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0009507
GO:GO:0009528	GO:GO:0009536	GO:GO:0009987	GO:GO:0010020	GO:GO:0016020	GO:GO:0016043
GO:GO:0043572	GO:GO:0043621	UniProt:K4BJS4	PFAM:PF13355	PANTHER:PTHR33925	PANTHER:PTHR33925:SF2
EnsemblPlantsGene:Solyc03g098610.2	EnsemblPlants:Solyc03g098610.2.1	UniParc:UPI0002768955	SEG:seg	:	:

Description

Plastid division protein CDP1, chloroplastic [Source:Projected from Arabidopsis thaliana (AT3G19180) UniProtKB/Swiss-Prot;Acc:Q8VY16]

Coordinates

chr3:-:60908552..60916782

Molecular Weight (calculated)

93129.2 Da

IEP (calculated)

8.258

GRAVY (calculated)

-0.232

Length

830 amino acids

Sequence
(BLAST)

001: MTAVFYQVPS ALYFCSNEND LDKVFFYNAA LDVPIRGKND KKWGKFRARV TVGRCGSRKK VNRRWRLYAT DTRVLESGTV DRSNANSQLP TVPSIEIPVT
101: CYQIIGVSDR AEKDEIVKSV MHLKNAEIED GYTMDAVVSR QNLLMDVRDK LLFEPEYAGN IKERVPPRSS LRIPWAWLSS ALCLLQEVGE EKLVLNIGQK
201: ALQHPDSKPY VHDILLSMAL AECAIAKVGF EKNRISQGFE ALARAQCLLR SKVSLGKMTL LSQIEESLEE LAPACTLELL GLPRTPENAE RRLGAIAALR
301: ELLRQGLDVE ASCQVQDWQC FLNQALNKLM ASEIVELLQW DNLAVTRKNK KSIESQNQRV VIDFNCFYVV LLAHIALGFS SKQIDLINKS KIICECLIAS
401: EGVDLKFEEA FLLFLLGQGD EAAATEKLRQ LELNSDTASR NLASVKETKD VSTVSKPLET WLKDAVLGLF PDTRDCSPSL VNFFRGEKRP FVSKGNKRGL
501: QTASQISHRP LAPAITRDQR ATDEPLPYGD TSRHLGSAVK QLAPPNLQAQ LTVDKVNVGN ASGMPSVQLK RNLGAGRKVW EIWLGLNSIV EKIIFVVSVG
601: CVIFVSFKLM NMQLWRMKNG SGWWLNTPRT TSSHSWKTDF PQDPSYRQPS NRRSGITEKL KKLFPKFTMQ IDSQASGLQN SFFAAGLSPS ATAAYKTPMP
701: IEEAETLIKK WQTIKAEALG PDHNIDGLFD VLDEPMLVQW QALSEAAKTR SCFWRFVLLQ LSVLRAEILT DGIGQEMAEI EAILEEAAEL VDESQLKNPN
801: YYSTYKIRYV LKRQDGGAWR FSEGHILTES

Best Arabidopsis Sequence Match ( AT3G19180.1 )
(BLAST)

001: MPVAYTFPVL PSSCLLCGIS NRSTSFVVDR PELQISGLLV VRSESGEFFG SGLSLRRFQR EGRRRLNAAG GGIHVVDNAP SRTSSLAAST STIELPVTCY
101: QLIGVSEQAE KDEVVKSVIN LKKTDAEEGY TMEAAAARQD LLMDVRDKLL FESEYAGNLK EKIAPKSPLR IPWAWLPGAL CLLQEVGQEK LVLDIGRAAL
201: RNLDSKPYIH DIFLSMALAE CAIAKAAFEV NKVSQGFEAL ARAQSFLKSK VTLGKLALLT QIEESLEELA PPCTLDLLGL PRTPENAERR RGAIAALREL
301: LRQGLSVEAS CQIQDWPCFL SQAISRLLAT EIVDLLPWDD LAITRKNKKS LESHNQRVVI DFNCFYMVLL GHIAVGFSGK QNETINKAKT ICECLIASEG
401: VDLKFEEAFC SFLLKQGSEA EALEKLKQLE SNSDSAVRNS ILGKESRSTS ATPSLEAWLM ESVLANFPDT RGCSPSLANF FRAEKKYPEN KKMGSPSIMN
501: HKTNQRPLST TQFVNSSQHL YTAVEQLTPT DLQSPVVSAK NNDETSASMP SVQLKRNLGV HKNKIWDEWL SQSSLIGRVS VVALLGCTVF FSLKLSGIRS
601: GRLQSMPISV SARPHSESDS FLWKTESGNF RKNLDSVNRN GIVGNIKVLI DMLKMHCGEH PDALYLKSSG QSATSLSHSA SELHKRPMDT EEAEELVRQW
701: ENVKAEALGP THQVYSLSEV LDESMLVQWQ TLAQTAEAKS CYWRFVLLHL EVLQAHIFED GIAGEAAEIE ALLEEAAELV DESQPKNAKY YSTYKIRYIL
801: KKQEDGLWKF CQSDIQIQK

Arabidopsis Description

CDP1Plastid division protein CDP1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8VY16]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.