Factsheet for GSMUA_Achr3P14180_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 6
peroxisome 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P15150_001
GSMUA_Achr2P03680_001
GSMUA_Achr3P14180_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G19180.1	GSMUA_Achr2P03680_001	AT1G75010.1	19564892
AT3G19180.1	GSMUA_Achr1P15150_001	AT3G19180.1	19564892
AT3G19180.1	GSMUA_Achr3P14180_001	AT3G19180.1	19564892

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P15150_001	Banana	plastid	69.87	70.46
HORVU6Hr1G028890.1	Barley	cytosol	6.24	58.43
HORVU5Hr1G052680.1	Barley	cytosol	6.0	57.47
HORVU5Hr1G052700.1	Barley	cytosol	6.0	57.47
HORVU7Hr1G022620.1	Barley	cytosol	6.12	57.3
HORVU5Hr1G017780.1	Barley	cytosol	6.12	57.3
HORVU1Hr1G043130.1	Barley	cytosol	6.0	56.18
HORVU4Hr1G064930.1	Barley	cytosol	6.0	56.18
HORVU6Hr1G023350.1	Barley	cytosol	6.0	56.18
HORVU2Hr1G119920.8	Barley	cytosol	46.46	53.38
TraesCS2A01G555400.1	Wheat	plastid	48.38	49.57
EES13095	Sorghum	plastid	47.18	49.25
TraesCS2D01G559100.1	Wheat	plastid	47.9	49.02
Zm00001d001844_P001	Maize	plastid	47.06	49.0
TraesCS2B01G588400.1	Wheat	plastid	47.54	48.23
VIT_17s0053g00090.t01	Wine grape	plastid	47.66	48.18
PGSC0003DMT400026299	Potato	cytosol	47.66	47.83
Solyc03g098610.2.1	Tomato	cytosol	47.54	47.71
KRH09390	Soybean	plasma membrane, plastid	43.82	44.95
KRH38887	Soybean	plastid	43.46	44.58
CDX92306	Canola	plasma membrane	42.74	44.22
Bra022392.1-P	Field mustard	plasma membrane, plastid	42.74	44.11
AT3G19180.1	Thale cress	plastid	43.1	43.83
CDX99260	Canola	plastid	42.26	43.73
GSMUA_Achr1P07790_001	Banana	endoplasmic reticulum, plasma membrane	18.49	17.56
Os04t0675700-00	Rice	cytosol	2.64	16.92

Protein Annotations

EnsemblPlants:GSMUA_Achr3P14180_001	EnsemblPlants:GSMUA_Achr3T14180_001	EnsemblPlantsGene:GSMUA_Achr3G14180_001	InterPro:DUF4101	ncoils:Coil	PANTHER:PTHR33925
PANTHER:PTHR33925:SF2	PFAM:PF13355	SEG:seg	UniParc:UPI0002950F41	UniProt:M0SEI5	MapMan:13.6.1.2.6

Description

OsFBX154 - F-box domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G14180_001]

Coordinates

chr3:-:13310706..13316974

Molecular Weight (calculated)

91905.6 Da

IEP (calculated)

7.399

GRAVY (calculated)

-0.114

Length

833 amino acids

Sequence
(BLAST)

001: MASSRAVLGL PVKWRTFGNG ALVDRRRVFA LGDVASSFAR DGERKLLGHL ALVAKSHSSR GEISGQAKLR VLEAPAVENW QILSGVEIPV TCFQLLGVTA
101: QSEKDEIAKV VMELKSSVIE DGYTAGTIVS RQGLLIDVRD KLLFEPEYAG NIKEKVPPKS SLRIPWSWLP GALCLLKEVG EDKMVLEIGQ AALQLADAKP
201: YSHDLLLSMT LAECSIAKIG FENNKISEGF EALAYARYLL RSHISLGKMP LLSQASIFLS SGSDLAPACT LELLGLPHVP DNAECRRGAL AALQELIRQG
301: LDVEFSCRVQ DWPCFLIQAM NKLMASEIVD LLSWDSLAIR RKNKKSIESQ NQRIVLDFNC FYLAMIAHIA LGFSTRQNEM ISRAKTICEC LIVSEGAELK
401: FEEAFCSFLL GQGGGMEAVE KLQQLEAIRS STSRNSLSSL SGMDKDKVVV NQALETWLKD AALSLFLDTH DCSPSMANFF GSPMRILSVG KQKIGTTKSL
501: PSAGNRISNF GLLPDHGTSV AQAAHDNLTN HLDKAFKHLL SVNLQRQMSV GDPTGNISLP SSQLKRNIDF HSKRFWESWF SKGNMAGKIA HTALVGWIVF
601: GAFKLLAMRS GNSKMPYELK TSHPCSTSQI TASSHHGSCD SASAFVKRDL MGQLRKFWAI FRGDLKYTNG VGSLQNTWPT DDLSRFSAVA AGTQVHRRQM
701: SIEEAEALVK QWQDIKAEAL GPSHQIQLLP NILSESILLK WEELANSAKA RSCFWKFVLL QTSILHAKIV SDGGDDEMAE IEAVLEEAAE LVDDSEPRKP
801: NYYSTYEVHY ILRRQEDGSW RFCGGGIQNQ NMT

Best Arabidopsis Sequence Match ( AT3G19180.1 )
(BLAST)

001: MPVAYTFPVL PSSCLLCGIS NRSTSFVVDR PELQISGLLV VRSESGEFFG SGLSLRRFQR EGRRRLNAAG GGIHVVDNAP SRTSSLAAST STIELPVTCY
101: QLIGVSEQAE KDEVVKSVIN LKKTDAEEGY TMEAAAARQD LLMDVRDKLL FESEYAGNLK EKIAPKSPLR IPWAWLPGAL CLLQEVGQEK LVLDIGRAAL
201: RNLDSKPYIH DIFLSMALAE CAIAKAAFEV NKVSQGFEAL ARAQSFLKSK VTLGKLALLT QIEESLEELA PPCTLDLLGL PRTPENAERR RGAIAALREL
301: LRQGLSVEAS CQIQDWPCFL SQAISRLLAT EIVDLLPWDD LAITRKNKKS LESHNQRVVI DFNCFYMVLL GHIAVGFSGK QNETINKAKT ICECLIASEG
401: VDLKFEEAFC SFLLKQGSEA EALEKLKQLE SNSDSAVRNS ILGKESRSTS ATPSLEAWLM ESVLANFPDT RGCSPSLANF FRAEKKYPEN KKMGSPSIMN
501: HKTNQRPLST TQFVNSSQHL YTAVEQLTPT DLQSPVVSAK NNDETSASMP SVQLKRNLGV HKNKIWDEWL SQSSLIGRVS VVALLGCTVF FSLKLSGIRS
601: GRLQSMPISV SARPHSESDS FLWKTESGNF RKNLDSVNRN GIVGNIKVLI DMLKMHCGEH PDALYLKSSG QSATSLSHSA SELHKRPMDT EEAEELVRQW
701: ENVKAEALGP THQVYSLSEV LDESMLVQWQ TLAQTAEAKS CYWRFVLLHL EVLQAHIFED GIAGEAAEIE ALLEEAAELV DESQPKNAKY YSTYKIRYIL
801: KKQEDGLWKF CQSDIQIQK

Arabidopsis Description

CDP1Plastid division protein CDP1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8VY16]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.