Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- cytosol 1
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G19180.1 | CDX73132 | AT1G75010.1 | 19564892 |
| AT3G19180.1 | CDY64472 | AT1G75010.1 | 19564892 |
| AT3G19180.1 | CDX92306 | AT3G19180.1 | 19564892 |
| AT3G19180.1 | CDX99260 | AT3G19180.1 | 19564892 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra022392.1-P | Field mustard | plasma membrane, plastid | 97.14 | 96.9 |
| CDX92306 | Canola | plasma membrane | 96.77 | 96.77 |
| AT3G19180.1 | Thale cress | plastid | 79.13 | 77.78 |
| HORVU6Hr1G028890.1 | Barley | cytosol | 6.09 | 55.06 |
| HORVU5Hr1G017780.1 | Barley | cytosol | 6.09 | 55.06 |
| VIT_17s0053g00090.t01 | Wine grape | plastid | 55.9 | 54.61 |
| HORVU7Hr1G022620.1 | Barley | cytosol | 5.96 | 53.93 |
| HORVU1Hr1G043130.1 | Barley | cytosol | 5.84 | 52.81 |
| PGSC0003DMT400026299 | Potato | cytosol | 53.79 | 52.17 |
| HORVU5Hr1G052700.1 | Barley | cytosol | 5.59 | 51.72 |
| HORVU5Hr1G052680.1 | Barley | cytosol | 5.59 | 51.72 |
| HORVU4Hr1G064930.1 | Barley | cytosol | 5.71 | 51.69 |
| HORVU6Hr1G023350.1 | Barley | cytosol | 5.71 | 51.69 |
| Solyc03g098610.2.1 | Tomato | cytosol | 53.17 | 51.57 |
| KRH09390 | Soybean | plasma membrane, plastid | 51.55 | 51.11 |
| KRH38887 | Soybean | plastid | 51.55 | 51.11 |
| HORVU2Hr1G119920.8 | Barley | cytosol | 44.22 | 49.1 |
| EES13095 | Sorghum | plastid | 45.84 | 46.24 |
| GSMUA_Achr1P15150_001 | Banana | plastid | 47.2 | 46.0 |
| TraesCS2B01G588400.1 | Wheat | plastid | 46.46 | 45.55 |
| Zm00001d001844_P001 | Maize | plastid | 45.09 | 45.38 |
| TraesCS2A01G555400.1 | Wheat | plastid | 45.71 | 45.26 |
| TraesCS2D01G559100.1 | Wheat | plastid | 45.47 | 44.96 |
| GSMUA_Achr3P14180_001 | Banana | mitochondrion | 43.73 | 42.26 |
| CDY61131 | Canola | plastid | 19.5 | 20.08 |
| CDY22390 | Canola | mitochondrion, plastid | 19.25 | 19.8 |
| Os04t0675700-00 | Rice | cytosol | 2.48 | 15.38 |
Protein Annotations
| EnsemblPlants:CDX99260 | EnsemblPlantsGene:GSBRNA2T00107506001 | InterPro:DUF4101 | ncoils:Coil | PANTHER:PTHR33925 | PANTHER:PTHR33925:SF2 |
| PFAM:PF13355 | ProteinID:CDX99260 | ProteinID:CDX99260.1 | SEG:seg | UniParc:UPI0004EEC59B | MapMan:13.6.1.2.6 |
Description
BnaC05g33750D
Coordinates
chrLK031909:-:645624..650150
Molecular Weight (calculated)
89337.0 Da
IEP (calculated)
6.930
GRAVY (calculated)
-0.220
Length
805 amino acids
Sequence
(BLAST)
(BLAST)
001: MPVLYTFPLL PSSSSLLRGI SNRGTSIILH PPEVQISCFL VARSDPGEFD GFSCSLRRRR LNAGGAHVFD NAPSRTSSLA ASTSTIEIPV TCYQLIGVSE
101: KAEKDEVVKS VLNLKKTDAE EGYTMEAAAA RQDLLMDVRD KLLFEPEYAG NLKENISPKS PLRIPWAWLP AALCLLQEVG EEKLVLDIGR SVLRHLDSKP
201: YIHDIFLAMA LSECAVAKDA FEANKVSQGF EALARAQSFL KSKVTLGKLA LLSQIEESLE ELAAPCTLDL LGLPPLPENA ERRRGAVAAL RELLRQGLDV
301: EASCQIQDWP CFLSQAISRL LATEIVDLLP WDTLAITRKN KKSLESHNQR VVIDFNCFYM VLVAHIAVGF SVKQTDKINK AKSICECLIA SEGVDLKFEE
401: AFCSFLLNQG SEAETLEKLK QLDSNSDSAV RNSILGKELR TTSATPSLEA WLKDSVLANF PDTRGCSPSL ANFFRAEKKY PENKKMGSLP IINHKTNQRP
501: ISSMQFMNSS QHLYTSVEQL APTNLQSPVA STKNIDESGA SRPSVQLKRN LGLQQNKIWN GWLSQSSLIQ RVSVAALLGC TVFFSLKLTG IRSARFQSLP
601: TWGSAKPHLE SDSGNFRRNL ASVNREGVVG NIKTLLDMLK RHHGEHSDAL YLKSSGLSAT LSHPTSEVHK RPMLTEDAEE LVRQWENIKA EALGPTHQVY
701: SLPEVLDEAM LVQWQTLAQT AKAKSCYWRF VLLNLEILQA HISTDGSIAG ETAEIEALLE EAAELVDESQ PKNAKYYSTY KIRYTLKKQE DGSWRFCQSD
801: IQIQK
101: KAEKDEVVKS VLNLKKTDAE EGYTMEAAAA RQDLLMDVRD KLLFEPEYAG NLKENISPKS PLRIPWAWLP AALCLLQEVG EEKLVLDIGR SVLRHLDSKP
201: YIHDIFLAMA LSECAVAKDA FEANKVSQGF EALARAQSFL KSKVTLGKLA LLSQIEESLE ELAAPCTLDL LGLPPLPENA ERRRGAVAAL RELLRQGLDV
301: EASCQIQDWP CFLSQAISRL LATEIVDLLP WDTLAITRKN KKSLESHNQR VVIDFNCFYM VLVAHIAVGF SVKQTDKINK AKSICECLIA SEGVDLKFEE
401: AFCSFLLNQG SEAETLEKLK QLDSNSDSAV RNSILGKELR TTSATPSLEA WLKDSVLANF PDTRGCSPSL ANFFRAEKKY PENKKMGSLP IINHKTNQRP
501: ISSMQFMNSS QHLYTSVEQL APTNLQSPVA STKNIDESGA SRPSVQLKRN LGLQQNKIWN GWLSQSSLIQ RVSVAALLGC TVFFSLKLTG IRSARFQSLP
601: TWGSAKPHLE SDSGNFRRNL ASVNREGVVG NIKTLLDMLK RHHGEHSDAL YLKSSGLSAT LSHPTSEVHK RPMLTEDAEE LVRQWENIKA EALGPTHQVY
701: SLPEVLDEAM LVQWQTLAQT AKAKSCYWRF VLLNLEILQA HISTDGSIAG ETAEIEALLE EAAELVDESQ PKNAKYYSTY KIRYTLKKQE DGSWRFCQSD
801: IQIQK
001: MPVAYTFPVL PSSCLLCGIS NRSTSFVVDR PELQISGLLV VRSESGEFFG SGLSLRRFQR EGRRRLNAAG GGIHVVDNAP SRTSSLAAST STIELPVTCY
101: QLIGVSEQAE KDEVVKSVIN LKKTDAEEGY TMEAAAARQD LLMDVRDKLL FESEYAGNLK EKIAPKSPLR IPWAWLPGAL CLLQEVGQEK LVLDIGRAAL
201: RNLDSKPYIH DIFLSMALAE CAIAKAAFEV NKVSQGFEAL ARAQSFLKSK VTLGKLALLT QIEESLEELA PPCTLDLLGL PRTPENAERR RGAIAALREL
301: LRQGLSVEAS CQIQDWPCFL SQAISRLLAT EIVDLLPWDD LAITRKNKKS LESHNQRVVI DFNCFYMVLL GHIAVGFSGK QNETINKAKT ICECLIASEG
401: VDLKFEEAFC SFLLKQGSEA EALEKLKQLE SNSDSAVRNS ILGKESRSTS ATPSLEAWLM ESVLANFPDT RGCSPSLANF FRAEKKYPEN KKMGSPSIMN
501: HKTNQRPLST TQFVNSSQHL YTAVEQLTPT DLQSPVVSAK NNDETSASMP SVQLKRNLGV HKNKIWDEWL SQSSLIGRVS VVALLGCTVF FSLKLSGIRS
601: GRLQSMPISV SARPHSESDS FLWKTESGNF RKNLDSVNRN GIVGNIKVLI DMLKMHCGEH PDALYLKSSG QSATSLSHSA SELHKRPMDT EEAEELVRQW
701: ENVKAEALGP THQVYSLSEV LDESMLVQWQ TLAQTAEAKS CYWRFVLLHL EVLQAHIFED GIAGEAAEIE ALLEEAAELV DESQPKNAKY YSTYKIRYIL
801: KKQEDGLWKF CQSDIQIQK
101: QLIGVSEQAE KDEVVKSVIN LKKTDAEEGY TMEAAAARQD LLMDVRDKLL FESEYAGNLK EKIAPKSPLR IPWAWLPGAL CLLQEVGQEK LVLDIGRAAL
201: RNLDSKPYIH DIFLSMALAE CAIAKAAFEV NKVSQGFEAL ARAQSFLKSK VTLGKLALLT QIEESLEELA PPCTLDLLGL PRTPENAERR RGAIAALREL
301: LRQGLSVEAS CQIQDWPCFL SQAISRLLAT EIVDLLPWDD LAITRKNKKS LESHNQRVVI DFNCFYMVLL GHIAVGFSGK QNETINKAKT ICECLIASEG
401: VDLKFEEAFC SFLLKQGSEA EALEKLKQLE SNSDSAVRNS ILGKESRSTS ATPSLEAWLM ESVLANFPDT RGCSPSLANF FRAEKKYPEN KKMGSPSIMN
501: HKTNQRPLST TQFVNSSQHL YTAVEQLTPT DLQSPVVSAK NNDETSASMP SVQLKRNLGV HKNKIWDEWL SQSSLIGRVS VVALLGCTVF FSLKLSGIRS
601: GRLQSMPISV SARPHSESDS FLWKTESGNF RKNLDSVNRN GIVGNIKVLI DMLKMHCGEH PDALYLKSSG QSATSLSHSA SELHKRPMDT EEAEELVRQW
701: ENVKAEALGP THQVYSLSEV LDESMLVQWQ TLAQTAEAKS CYWRFVLLHL EVLQAHIFED GIAGEAAEIE ALLEEAAELV DESQPKNAKY YSTYKIRYIL
801: KKQEDGLWKF CQSDIQIQK
Arabidopsis Description
CDP1Plastid division protein CDP1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8VY16]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.