Factsheet for HORVU6Hr1G028890.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G043130.1
HORVU2Hr1G119920.8
HORVU4Hr1G064930.1
HORVU5Hr1G017780.1
HORVU5Hr1G052680.1
HORVU5Hr1G052700.1
HORVU5Hr1G088120.2
HORVU6Hr1G023350.1
HORVU6Hr1G028890.1
HORVU7Hr1G022620.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G19180.1	HORVU5Hr1G088120.2	AT1G75010.1	19564892
AT3G19180.1	HORVU1Hr1G043130.1	AT3G19180.1	19564892
AT3G19180.1	HORVU2Hr1G119920.8	AT3G19180.1	19564892
AT3G19180.1	HORVU4Hr1G064930.1	AT3G19180.1	19564892
AT3G19180.1	HORVU5Hr1G017780.1	AT3G19180.1	19564892
AT3G19180.1	HORVU5Hr1G052680.1	AT3G19180.1	19564892
AT3G19180.1	HORVU5Hr1G052700.1	AT3G19180.1	19564892
AT3G19180.1	HORVU6Hr1G023350.1	AT3G19180.1	19564892
AT3G19180.1	HORVU6Hr1G028890.1	AT3G19180.1	19564892
AT3G19180.1	HORVU7Hr1G022620.1	AT3G19180.1	19564892

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G022620.1	Barley	cytosol	97.75	97.75
HORVU5Hr1G017780.1	Barley	cytosol	97.75	97.75
HORVU5Hr1G052700.1	Barley	cytosol	95.51	97.7
HORVU5Hr1G052680.1	Barley	cytosol	95.51	97.7
HORVU1Hr1G043130.1	Barley	cytosol	96.63	96.63
HORVU6Hr1G023350.1	Barley	cytosol	95.51	95.51
HORVU4Hr1G064930.1	Barley	cytosol	95.51	95.51
HORVU2Hr1G119920.8	Barley	cytosol	86.52	10.62
TraesCS2A01G555400.1	Wheat	plastid	89.89	9.84
TraesCS2B01G588400.1	Wheat	plastid	88.76	9.62
TraesCS2D01G559100.1	Wheat	plastid	87.64	9.58
EES13095	Sorghum	plastid	74.16	8.27
Zm00001d001844_P001	Maize	plastid	74.16	8.25
GSMUA_Achr1P15150_001	Banana	plastid	62.92	6.78
KRH09390	Soybean	plasma membrane, plastid	57.3	6.28
KRH38887	Soybean	plastid	57.3	6.28
GSMUA_Achr3P14180_001	Banana	mitochondrion	58.43	6.24
PGSC0003DMT400026299	Potato	cytosol	57.3	6.14
Solyc03g098610.2.1	Tomato	cytosol	57.3	6.14
CDX99260	Canola	plastid	55.06	6.09
CDX92306	Canola	plasma membrane	55.06	6.09
Bra022392.1-P	Field mustard	plasma membrane, plastid	55.06	6.07
AT3G19180.1	Thale cress	plastid	55.06	5.98
VIT_17s0053g00090.t01	Wine grape	plastid	55.06	5.95
Os04t0675700-00	Rice	cytosol	5.62	3.85
HORVU6Hr1G012020.11	Barley	nucleus	22.47	2.43

Protein Annotations

EnsemblPlants:HORVU6Hr1G028890.1	EnsemblPlantsGene:HORVU6Hr1G028890	PANTHER:PTHR33925	PANTHER:PTHR33925:SF2	UniParc:UPI000B468CFA	UniProt:A0A287TQ43
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chrchr6H:-:116314411..116314788

Molecular Weight (calculated)

10255.3 Da

IEP (calculated)

8.497

GRAVY (calculated)

-0.517

Length

89 amino acids

Sequence
(BLAST)

1: RRTRRCVSVT EKAEKDKIVK SSIELRKSEI EDGYTEEVST CRHALLLDVR DKLLFEQEYA GSTRAKVPPR SSLHIPWSWL PAALCVLQE

Best Arabidopsis Sequence Match ( AT3G19180.2 )
(BLAST)

001: MPVAYTFPVL PSSCLLCGIS NRSTSFVVDR PELQISGLLV VRSESGEFFG SGLSLRRFQR EGRRRLNAAG GGIHVVDNAP SRTSSLAAST STIELPVTCY
101: QLIGVSEQAE KDEVVKSVIN LKKTDAEEGY TMEAAAARQD LLMDVRDKLL FESEYAGNLK EKIAPKSPLR IPWAWLPGAL CLLQEVGQEK LVLDIGRAAL
201: RNLDSKPYIH DIFLSMALAE CAIAKAAFEV NKVSQGFEAL ARAQSFLKSK VTLGKLALLT QIEESLEELA PPCTLDLLGL PRTPENAERR RGAIAALREL
301: LRQGLSVEAS CQIQDWPCFL SQAISRLLAT EIVDLLPWDD LAITRKNKKS LESHNQRVVI DFNCFYMVLL GHIAVGFSGK QNETINKAKT ICECLIASEG
401: VDLKFEEAFC SFLLKQGSEA EALEKLKQLE SNSDSAVRNS ILGKESRSTS ATPSLEAWLM ESVLANFPDT RGCSPSLANF FRAEKKYPEN KKMGSPSIMN
501: HKTNQRPLST TQFVNSSQHL YTAVEQLTPT DLQSPVVSAK NNDETSASMP SVQLKRNLGV HKNKIWDEWL SQSSLIGRVS VVALLGCTVF FSLKLSGIRS
601: GRLQSMPISV SARPHSESDS FLWKTESGNF RKNLDSVNRN GIVGNIKVLI DMLKMHCGEH PDALYLKSSG QSATSLSHSA SELHKRPMDT EEAEELVRQW
701: ENVKAEALGP THQVYSLSEV LDESMLVQVT VSIHLLLFLY LIMLVYYS

Arabidopsis Description

CDP1Plastid division protein CDP1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8VY16]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.