Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU0Hr1G018830.1 | |
| HORVU2Hr1G109020.1 | |
| HORVU5Hr1G088120.2 | |
| HORVU6Hr1G012020.11 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G117700.1 | Wheat | plastid | 85.66 | 91.8 |
| TraesCS6B01G089500.2 | Wheat | plastid | 84.93 | 91.49 |
| TraesCS6A01G066200.3 | Wheat | plastid | 85.54 | 91.19 |
| Os02t0122400-01 | Rice | plastid | 77.52 | 82.96 |
| EES06197 | Sorghum | plastid | 75.7 | 81.76 |
| Zm00001d053923_P003 | Maize | plastid | 72.3 | 59.5 |
| VIT_02s0033g00060.t01 | Wine grape | mitochondrion | 51.88 | 53.58 |
| Solyc04g081070.2.1 | Tomato | plastid | 49.45 | 49.69 |
| KRH17386 | Soybean | plastid | 47.87 | 49.62 |
| PGSC0003DMT400009646 | Potato | plastid | 49.45 | 49.33 |
| KRH05905 | Soybean | plastid | 47.39 | 48.51 |
| Bra033637.1-P | Field mustard | mitochondrion, plastid | 45.81 | 48.15 |
| CDY22390 | Canola | mitochondrion, plastid | 45.81 | 48.15 |
| GSMUA_Achr1P07790_001 | Banana | endoplasmic reticulum, plasma membrane | 51.03 | 47.89 |
| CDY61131 | Canola | plastid | 45.32 | 47.7 |
| AT5G42480.1 | Thale cress | plastid | 44.84 | 46.07 |
| HORVU6Hr1G028890.1 | Barley | cytosol | 2.43 | 22.47 |
| HORVU5Hr1G017780.1 | Barley | cytosol | 2.43 | 22.47 |
| HORVU1Hr1G043130.1 | Barley | cytosol | 2.43 | 22.47 |
| HORVU2Hr1G119920.8 | Barley | cytosol | 18.83 | 21.38 |
| HORVU7Hr1G022620.1 | Barley | cytosol | 2.31 | 21.35 |
| HORVU5Hr1G052700.1 | Barley | cytosol | 2.19 | 20.69 |
| HORVU5Hr1G052680.1 | Barley | cytosol | 2.19 | 20.69 |
| HORVU6Hr1G023350.1 | Barley | cytosol | 2.19 | 20.22 |
| HORVU4Hr1G064930.1 | Barley | cytosol | 2.19 | 20.22 |
Protein Annotations
| MapMan:13.6.1.2.5 | UniProt:A0A287TBL3 | InterPro:DUF4101 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0008150 | GO:GO:0009507 |
| GO:GO:0009536 | GO:GO:0009658 | GO:GO:0009706 | GO:GO:0009941 | GO:GO:0009987 | GO:GO:0010020 |
| GO:GO:0016020 | GO:GO:0016043 | GO:GO:0031357 | GO:GO:0043621 | EnsemblPlantsGene:HORVU6Hr1G012020 | EnsemblPlants:HORVU6Hr1G012020.11 |
| InterPro:IPR036869 | InterPro:J_dom_sf | PFAM:PF13355 | PANTHER:PTHR33925 | PANTHER:PTHR33925:SF3 | SUPFAM:SSF46565 |
| UniParc:UPI000B47B811 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chrchr6H:-:22584038..22588324
Molecular Weight (calculated)
90294.2 Da
IEP (calculated)
4.750
GRAVY (calculated)
-0.238
Length
823 amino acids
Sequence
(BLAST)
(BLAST)
001: GLQHHTDSPQ CIRTNNDRPT ADARSQAAGA AHAAVPLPTF FSNPHPPPPP PPPAMEGFHN LLARPNSAPL AFSLPRRRRR PPPPPPADAL ACRAASRWAD
101: RLFADFHLLP AAAPEPPAAA PAGVSASPFV PLFPDAADRS FPLQVDLYKV LGAEPHFLGD GVRRAFEART AKPPQYGYST DALVGRRQML QIAHDTLTNQ
201: SSRTEYDRAL SEDRDAALTL DVAWDKVPGV LCTLQEAGEA QAVLAIGEHL LEDRPPKRFK QDVVLTMALA YVDISRDAMA ASPPDVICCC EVLERALKLL
301: QEDGAINLAP DLLSQIDETL EEITPRCVLE FLALPLDEKH QSKRQEGLRG VRNILWSVGR GGIATVGGGF SREAYMNEAF LQMTSAEQMD FFSKTPNSIP
401: PEWFEIYSVA LANVAQAIVS KRPELIMVAD DLFEQLQKFN IGSQYAYGNE MDLALERALC SLLVGDISNC RTWLAIDNES SPHRDPKIVE FIVNNSSIDH
501: QENDLLPGLC KLLETWLVSE VFPRSRDTRG MQFTLGDYYD DPKVLSYLEM MEGGGASHLA AAAAIAKLGA QATAALGTVK SSAIQAFNKI FPLIEQLDRS
601: AMENPNDGLE ESVNKFDQKN IMGFDILDSK NAFLKIVSAS ALFALLTVIG MKYLPRKKAL LPAIRSEHES VAVANVVDSV DDDEPDEPIQ IPKMDAKLAE
701: DIVRKWQSIK SKALGSDHSV ASLQEVLDGN MLKVWTDRAA EIERKGWFWD YTLSNVAIDS ITVSLDGRRA TVEATIEEAG QLTDATDPRN DDLYDTKYTT
801: RYEMAFTGPG GWKITEGAVL KSS
101: RLFADFHLLP AAAPEPPAAA PAGVSASPFV PLFPDAADRS FPLQVDLYKV LGAEPHFLGD GVRRAFEART AKPPQYGYST DALVGRRQML QIAHDTLTNQ
201: SSRTEYDRAL SEDRDAALTL DVAWDKVPGV LCTLQEAGEA QAVLAIGEHL LEDRPPKRFK QDVVLTMALA YVDISRDAMA ASPPDVICCC EVLERALKLL
301: QEDGAINLAP DLLSQIDETL EEITPRCVLE FLALPLDEKH QSKRQEGLRG VRNILWSVGR GGIATVGGGF SREAYMNEAF LQMTSAEQMD FFSKTPNSIP
401: PEWFEIYSVA LANVAQAIVS KRPELIMVAD DLFEQLQKFN IGSQYAYGNE MDLALERALC SLLVGDISNC RTWLAIDNES SPHRDPKIVE FIVNNSSIDH
501: QENDLLPGLC KLLETWLVSE VFPRSRDTRG MQFTLGDYYD DPKVLSYLEM MEGGGASHLA AAAAIAKLGA QATAALGTVK SSAIQAFNKI FPLIEQLDRS
601: AMENPNDGLE ESVNKFDQKN IMGFDILDSK NAFLKIVSAS ALFALLTVIG MKYLPRKKAL LPAIRSEHES VAVANVVDSV DDDEPDEPIQ IPKMDAKLAE
701: DIVRKWQSIK SKALGSDHSV ASLQEVLDGN MLKVWTDRAA EIERKGWFWD YTLSNVAIDS ITVSLDGRRA TVEATIEEAG QLTDATDPRN DDLYDTKYTT
801: RYEMAFTGPG GWKITEGAVL KSS
001: MEALSHVGIG LSPFQLCRLP PATTKLRRSH NTSTTICSAS KWADRLLSDF NFTSDSSSSS FATATTTATL VSPPPSIDRP ERHVPIPIDF YQVLGAQTHF
101: LTDGIRRAFE ARVSKPPQFG FSDDALISRR QILQAACETL SNPRSRREYN EGLLDDEEAT VITDVPWDKV PGALCVLQEG GETEIVLRVG EALLKERLPK
201: SFKQDVVLVM ALAFLDVSRD AMALDPPDFI TGYEFVEEAL KLLQEEGASS LAPDLRAQID ETLEEITPRY VLELLGLPLG DDYAAKRLNG LSGVRNILWS
301: VGGGGASALV GGLTREKFMN EAFLRMTAAE QVDLFVATPS NIPAESFEVY EVALALVAQA FIGKKPHLLQ DADKQFQQLQ QAKVMAMEIP AMLYDTRNNW
401: EIDFGLERGL CALLIGKVDE CRMWLGLDSE DSQYRNPAIV EFVLENSNRD DNDDLPGLCK LLETWLAGVV FPRFRDTKDK KFKLGDYYDD PMVLSYLERV
501: EVVQGSPLAA AAAMARIGAE HVKASAMQAL QKVFPSRYTD RNSAEPKDVQ ETVFSVDPVG NNVGRDGEPG VFIAEAVRPS ENFETNDYAI RAGVSESSVD
601: ETTVEMSVAD MLKEASVKIL AAGVAIGLIS LFSQKYFLKS SSSFQRKDMV SSMESDVATI GSVRADDSEA LPRMDARTAE NIVSKWQKIK SLAFGPDHRI
701: EMLPEVLDGR MLKIWTDRAA ETAQLGLVYD YTLLKLSVDS VTVSADGTRA LVEATLEESA CLSDLVHPEN NATDVRTYTT RYEVFWSKSG WKITEGSVLA
801: S
101: LTDGIRRAFE ARVSKPPQFG FSDDALISRR QILQAACETL SNPRSRREYN EGLLDDEEAT VITDVPWDKV PGALCVLQEG GETEIVLRVG EALLKERLPK
201: SFKQDVVLVM ALAFLDVSRD AMALDPPDFI TGYEFVEEAL KLLQEEGASS LAPDLRAQID ETLEEITPRY VLELLGLPLG DDYAAKRLNG LSGVRNILWS
301: VGGGGASALV GGLTREKFMN EAFLRMTAAE QVDLFVATPS NIPAESFEVY EVALALVAQA FIGKKPHLLQ DADKQFQQLQ QAKVMAMEIP AMLYDTRNNW
401: EIDFGLERGL CALLIGKVDE CRMWLGLDSE DSQYRNPAIV EFVLENSNRD DNDDLPGLCK LLETWLAGVV FPRFRDTKDK KFKLGDYYDD PMVLSYLERV
501: EVVQGSPLAA AAAMARIGAE HVKASAMQAL QKVFPSRYTD RNSAEPKDVQ ETVFSVDPVG NNVGRDGEPG VFIAEAVRPS ENFETNDYAI RAGVSESSVD
601: ETTVEMSVAD MLKEASVKIL AAGVAIGLIS LFSQKYFLKS SSSFQRKDMV SSMESDVATI GSVRADDSEA LPRMDARTAE NIVSKWQKIK SLAFGPDHRI
701: EMLPEVLDGR MLKIWTDRAA ETAQLGLVYD YTLLKLSVDS VTVSADGTRA LVEATLEESA CLSDLVHPEN NATDVRTYTT RYEVFWSKSG WKITEGSVLA
801: S
Arabidopsis Description
ARC6Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FIG9]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.