CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	secretory
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plasma membrane
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73132
CDY06595
CDY17316
CDY19897
CDY20776
CDY22390
CDY61131
CDY64472

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42480.1	CDX73132	AT1G75010.1	19453460
AT5G42480.1	CDY64472	AT1G75010.1	19453460
AT5G42480.1	CDY22390	AT5G42480.1	16146521
AT5G42480.1	CDY61131	AT5G42480.1	16146521
AT5G42480.1	CDY06595	AT5G55280.1	16146521
AT5G42480.1	CDY17316	AT5G55280.1	16146521
AT5G42480.1	CDY19897	AT5G55280.1	16146521
AT5G42480.1	CDY20776	AT5G55280.1	16146521
AT5G42480.1	CDY06595	AT5G55280.1	19453460
AT5G42480.1	CDY17316	AT5G55280.1	19453460
AT5G42480.1	CDY19897	AT5G55280.1	19453460
AT5G42480.1	CDY20776	AT5G55280.1	19453460

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22390	Canola	mitochondrion, plastid	92.33	92.21
AT5G42480.1	Thale cress	plastid	83.89	81.9
VIT_02s0033g00060.t01	Wine grape	mitochondrion	61.76	60.6
Solyc04g081070.2.1	Tomato	plastid	59.46	56.78
PGSC0003DMT400009646	Potato	plastid	58.95	55.88
KRH17386	Soybean	plastid	55.75	54.91
KRH05905	Soybean	plastid	55.5	53.98
Os02t0122400-01	Rice	plastid	49.49	50.33
EES06197	Sorghum	plastid	47.95	49.21
GSMUA_Achr1P07790_001	Banana	endoplasmic reticulum, plasma membrane	54.35	48.46
TraesCS6A01G066200.3	Wheat	plastid	47.7	48.32
TraesCSU01G117700.1	Wheat	plastid	47.31	48.18
TraesCS6B01G089500.2	Wheat	plastid	46.68	47.77
HORVU6Hr1G012020.11	Barley	nucleus	47.7	45.32
Zm00001d053923_P003	Maize	plastid	46.04	36.0
CDX99260	Canola	plastid	20.08	19.5
CDX92306	Canola	plasma membrane	19.95	19.38

Protein Annotations

EnsemblPlants:CDY61131	EnsemblPlantsGene:GSBRNA2T00030612001	InterPro:DUF4101	InterPro:IPR036869	InterPro:J_dom_sf	PANTHER:PTHR33925
PANTHER:PTHR33925:SF3	PFAM:PF13355	ProteinID:CDY61131	ProteinID:CDY61131.1	SEG:seg	SUPFAM:SSF46565
UniParc:UPI0004EF15EF	UniProt:A0A078JAC6	MapMan:13.6.1.2.5	:	:	:

Description

BnaCnng37370DBnaCnng37370D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JAC6]

Coordinates

chrLK033959:+:15985..19134

Molecular Weight (calculated)

85668.9 Da

IEP (calculated)

4.598

GRAVY (calculated)

-0.129

Length

782 amino acids

Sequence
(BLAST)

001: MEALGHLGIA LFPFQICRLP PATKLRRSLP SSPVITTVCS ASRWADRLLS DFNFTTDSSS VATATATLAS PPLSIDRPER HVPIPIDFYQ VLGAETHFLT
101: DGIRRAFEAR VSKPPQFGFS DDALISRRQI LQAACETLSN PRSRRGYNES LLDDEEATVI TDVPWDKVPG ALCVLQEAGE TEVVLRVGEA LLKERLPKSF
201: KQDVVLVMVL AFVDISRDAM ALDPPDFITG YEFVEEALKL LQEEGASSLA PDLRAQIDET LEEITPRYVL ELLGLPLGDD KRQDGLSGVR NILWSVGGGG
301: ASAVVGGLTR EKFMNEAFLR MTASEQVDLF VATPSNIPAE SFEVYEVALA LVAQAFIGKK PHLLQDADKQ FQQLQQAKVM AMEIPAMLYD SRNNWEVDFG
401: LERGLCALLI GKVDESRMWL GLDSEDSQYR NPAIVDFVLE NSNRDDNHDL PGLCKLLETW LAGVVFPRFR DTKDKQFKLG DYYDDPMVLS YLERVEVVQG
501: SPLAAAAAMA RMGAEHAKAS AIQALQKVFP SRYSDAQETV STVDHAGNNV GHDVDETAVL SAATEGASEI FDTKSSVDAI TVEKSNADKL KEASVKILSA
601: GVVVGIISLA SLRYMSIKGG SSSLQRKDMT SSTASEIGTI GPVKSEDSVA LPRMDARTAE SLVSKWQKIK SQAFGRDHCI EMLPEVLDGR MLKIWTDRAS
701: ETKQLGLVYD YTLLKLSVDS VTVSADGTRA LVEATLEESA CLSDLVHPEN NATDVRTYTT RYEAFWSKSG GWKITEGSVL TS

Best Arabidopsis Sequence Match ( AT5G42480.1 )
(BLAST)

001: MEALSHVGIG LSPFQLCRLP PATTKLRRSH NTSTTICSAS KWADRLLSDF NFTSDSSSSS FATATTTATL VSPPPSIDRP ERHVPIPIDF YQVLGAQTHF
101: LTDGIRRAFE ARVSKPPQFG FSDDALISRR QILQAACETL SNPRSRREYN EGLLDDEEAT VITDVPWDKV PGALCVLQEG GETEIVLRVG EALLKERLPK
201: SFKQDVVLVM ALAFLDVSRD AMALDPPDFI TGYEFVEEAL KLLQEEGASS LAPDLRAQID ETLEEITPRY VLELLGLPLG DDYAAKRLNG LSGVRNILWS
301: VGGGGASALV GGLTREKFMN EAFLRMTAAE QVDLFVATPS NIPAESFEVY EVALALVAQA FIGKKPHLLQ DADKQFQQLQ QAKVMAMEIP AMLYDTRNNW
401: EIDFGLERGL CALLIGKVDE CRMWLGLDSE DSQYRNPAIV EFVLENSNRD DNDDLPGLCK LLETWLAGVV FPRFRDTKDK KFKLGDYYDD PMVLSYLERV
501: EVVQGSPLAA AAAMARIGAE HVKASAMQAL QKVFPSRYTD RNSAEPKDVQ ETVFSVDPVG NNVGRDGEPG VFIAEAVRPS ENFETNDYAI RAGVSESSVD
601: ETTVEMSVAD MLKEASVKIL AAGVAIGLIS LFSQKYFLKS SSSFQRKDMV SSMESDVATI GSVRADDSEA LPRMDARTAE NIVSKWQKIK SLAFGPDHRI
701: EMLPEVLDGR MLKIWTDRAA ETAQLGLVYD YTLLKLSVDS VTVSADGTRA LVEATLEESA CLSDLVHPEN NATDVRTYTT RYEVFWSKSG WKITEGSVLA
801: S

Arabidopsis Description

ARC6Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FIG9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.