CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES06197
EES13042
OQU89910

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42480.1	OQU89910	AT1G75010.1	19453460
AT5G42480.1	EES06197	AT5G42480.1	16146521
AT5G42480.1	EES13042	AT5G55280.1	16146521
AT5G42480.1	EES13042	AT5G55280.1	19453460

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0122400-01	Rice	plastid	82.81	82.05
TraesCSU01G117700.1	Wheat	plastid	80.18	79.56
TraesCS6B01G089500.2	Wheat	plastid	79.53	79.32
TraesCS6A01G066200.3	Wheat	plastid	79.66	78.63
HORVU6Hr1G012020.11	Barley	nucleus	81.76	75.7
Zm00001d053923_P003	Maize	plastid	89.5	68.2
VIT_02s0033g00060.t01	Wine grape	mitochondrion	56.56	54.08
Solyc04g081070.2.1	Tomato	plastid	54.59	50.79
PGSC0003DMT400009646	Potato	plastid	54.2	50.06
KRH17386	Soybean	plastid	51.18	49.12
GSMUA_Achr1P07790_001	Banana	endoplasmic reticulum, plasma membrane	55.25	48.0
CDY61131	Canola	plastid	49.21	47.95
KRH05905	Soybean	plastid	50.52	47.89
CDY22390	Canola	mitochondrion, plastid	49.08	47.77
Bra033637.1-P	Field mustard	mitochondrion, plastid	49.08	47.77
AT5G42480.1	Thale cress	plastid	48.29	45.94
EES13095	Sorghum	plastid	21.92	20.93

Protein Annotations

MapMan:13.6.1.2.5	EntrezGene:8068265	UniProt:C5XT22	InterPro:DUF4101	EnsemblPlants:EES06197	ProteinID:EES06197
ProteinID:EES06197.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009658
GO:GO:0009706	GO:GO:0009941	GO:GO:0009987	GO:GO:0010020	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0031357	GO:GO:0043621	InterPro:IPR036869	InterPro:J_dom_sf	PFAM:PF13355
PANTHER:PTHR33925	PANTHER:PTHR33925:SF3	EnsemblPlantsGene:SORBI_3004G020100	SUPFAM:SSF46565	unigene:Sbi.4283	UniParc:UPI0001A85F16
RefSeq:XP_002453221.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:1583664..1588025

Molecular Weight (calculated)

83752.8 Da

IEP (calculated)

4.734

GRAVY (calculated)

-0.226

Length

762 amino acids

Sequence
(BLAST)

001: MEGVHSLLAR PNSAPFAFSQ PPLRRHHRPP PPGPSACRAA SRWADRLFAD FHLLPTATAA ADPPAAAPSS SPFVPLFPDA ADRALPLPVD FYKILGAEPH
101: FLGDGIRRAF ESRIAKPPQY GYSTEALVGR RQMLQIAHDT LTNQSSRTEY DRALSEDRDA ALTMDVAWDK VPGVLCVLQE AGEAQLVLAT GEQLLQDRPP
201: KRFKQDLVLA MALAYVDLSR DAMAASPPDV ICCCEVLERA LKLLQEDGAS NLAPELLAQI DETLEEITPR CVLELLALPT DEKHKNKRQE GLQGARNILW
301: SVGQGGIATV GGGFSREAFM NEAFLQMTSA EQMDFFSKTP NSIPPEWFEI YSVALAHIAQ AIASKRPQFI MMADDLFEQL QKFNIGSQYP YENEMNLALE
401: RALCSLLVGD ISNCRMWLGI DNESSPYRDP KIIEFVVNNS SIDEENDLLP GLCKLLETWL VSEVFPRSRD TRGMQFRLGD YYDDPKVLSY LERMEGGGAS
501: HLAAAAAIAK LGAQATAALG TVKSSALQAF SKVFPLIEQL DRSGKDTPGD DLEKSLEKLA QESVAGDAIH DSKNAALKII SAGALFALFA VIGLKCLPRK
601: KSLPALKSEY GSVAVADSVD GLGADEEPLE IPRMDAKLAE DIVRKWQSIK SKALGPEHTV TALQEILDGN MLKVWMDRAT EIERHGWFWE YTLSDVTIDS
701: ITVSMDGRRA TVEATIEEMG QLTDVADPKN NDAYDTKYTA RYEMSYSKSG GWRITEGAVL KS

Best Arabidopsis Sequence Match ( AT5G42480.1 )
(BLAST)

001: MEALSHVGIG LSPFQLCRLP PATTKLRRSH NTSTTICSAS KWADRLLSDF NFTSDSSSSS FATATTTATL VSPPPSIDRP ERHVPIPIDF YQVLGAQTHF
101: LTDGIRRAFE ARVSKPPQFG FSDDALISRR QILQAACETL SNPRSRREYN EGLLDDEEAT VITDVPWDKV PGALCVLQEG GETEIVLRVG EALLKERLPK
201: SFKQDVVLVM ALAFLDVSRD AMALDPPDFI TGYEFVEEAL KLLQEEGASS LAPDLRAQID ETLEEITPRY VLELLGLPLG DDYAAKRLNG LSGVRNILWS
301: VGGGGASALV GGLTREKFMN EAFLRMTAAE QVDLFVATPS NIPAESFEVY EVALALVAQA FIGKKPHLLQ DADKQFQQLQ QAKVMAMEIP AMLYDTRNNW
401: EIDFGLERGL CALLIGKVDE CRMWLGLDSE DSQYRNPAIV EFVLENSNRD DNDDLPGLCK LLETWLAGVV FPRFRDTKDK KFKLGDYYDD PMVLSYLERV
501: EVVQGSPLAA AAAMARIGAE HVKASAMQAL QKVFPSRYTD RNSAEPKDVQ ETVFSVDPVG NNVGRDGEPG VFIAEAVRPS ENFETNDYAI RAGVSESSVD
601: ETTVEMSVAD MLKEASVKIL AAGVAIGLIS LFSQKYFLKS SSSFQRKDMV SSMESDVATI GSVRADDSEA LPRMDARTAE NIVSKWQKIK SLAFGPDHRI
701: EMLPEVLDGR MLKIWTDRAA ETAQLGLVYD YTLLKLSVDS VTVSADGTRA LVEATLEESA CLSDLVHPEN NATDVRTYTT RYEVFWSKSG WKITEGSVLA
801: S

Arabidopsis Description

ARC6Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FIG9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.