Factsheet for Bra033637.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002918.1-P
Bra015875.1-P
Bra033637.1-P
Bra035565.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42480.1	Bra015875.1-P	AT1G75010.1	19453460
AT5G42480.1	Bra033637.1-P	AT5G42480.1	16146521
AT5G42480.1	Bra002918.1-P	AT5G55280.1	16146521
AT5G42480.1	Bra035565.1-P	AT5G55280.1	16146521
AT5G42480.1	Bra002918.1-P	AT5G55280.1	19453460
AT5G42480.1	Bra035565.1-P	AT5G55280.1	19453460

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22390	Canola	mitochondrion, plastid	100.0	100.0
AT5G42480.1	Thale cress	plastid	83.91	82.02
VIT_02s0033g00060.t01	Wine grape	mitochondrion	61.94	60.85
Solyc04g081070.2.1	Tomato	plastid	59.39	56.78
PGSC0003DMT400009646	Potato	plastid	59.39	56.36
KRH17386	Soybean	plastid	56.45	55.67
KRH05905	Soybean	plastid	55.94	54.48
Os02t0122400-01	Rice	plastid	48.79	49.67
EES06197	Sorghum	plastid	47.77	49.08
TraesCS6A01G066200.3	Wheat	plastid	48.02	48.7
TraesCSU01G117700.1	Wheat	plastid	47.77	48.7
TraesCS6B01G089500.2	Wheat	plastid	47.13	48.3
GSMUA_Achr1P07790_001	Banana	endoplasmic reticulum, plasma membrane	53.51	47.78
HORVU6Hr1G012020.11	Barley	nucleus	48.15	45.81
Zm00001d053923_P003	Maize	plastid	45.98	36.0
Bra022392.1-P	Field mustard	plasma membrane, plastid	19.8	19.21

Protein Annotations

MapMan:13.6.1.2.5	EnsemblPlantsGene:Bra033637	EnsemblPlants:Bra033637.1	EnsemblPlants:Bra033637.1-P	InterPro:DUF4101	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009658	GO:GO:0009706	GO:GO:0009941
GO:GO:0009987	GO:GO:0010020	GO:GO:0016020	GO:GO:0016043	GO:GO:0031357	GO:GO:0043621
InterPro:IPR036869	InterPro:J_dom_sf	UniProt:M4EXU8	PFAM:PF13355	PANTHER:PTHR33925	PANTHER:PTHR33925:SF3
SUPFAM:SSF46565	UniParc:UPI000253F822	SEG:seg	:	:	:

Description

AT5G42480 (E=0.0) ARC6 | ARC6 (ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6); protein binding

Coordinates

chrA06:-:25871359..25874294

Molecular Weight (calculated)

85883.1 Da

IEP (calculated)

4.582

GRAVY (calculated)

-0.127

Length

783 amino acids

Sequence
(BLAST)

001: MEALGRHLGI GLFPFQICRL PPATKLRRSL PSSPVITTVC SASRWADRLL PDFNFTTDSS SSSSASTATL VSPPPSIDRP ERHVAIPIDF YEVLGAETHF
101: LTDGIRRAFE ARVSKPPQFG FSDDALISRR QILQAACETL SNPRSRREYD ESLVDDEAAT VFTDVPWDKV PGALCVLQEA GETEVVLRVG EALLKERLPK
201: SFKQDVVLVM ALAFLDISRD AMALHPPDFI TGYEFVEEAL KLLQEEGASS LAPDLRSQID ETLEEITPRY VLELLALPLG DDKRLAGLSG VRNILWSVGG
301: GGASAVVGGL TREKFMNEAF LRMTASEQVD LFVATPSNIP AESFEVYEVA LALVAQAFIA KKPHLLQDAD KQFQQLQQAK VMAMEIPAML YDSRNNWEVD
401: FGLERGLCAL LIGKVDECRM WLGLDSEDSQ YRNPAIVEFV LENSNRDDLP GLCKLLETWL AGVVFPRFRD TKDKQFKLGD YYDDPMVLSY LERVEVVQGS
501: PLAAAAAMAR MGAEHVKASA IQALQKVFPS RYSDAQETVS TVDRAGNNNV GHDDADDETA VLSAATEGPS EIFDTKSSVD AITVEQSNAD KLKEASVKIL
601: SAGVVVGIIS LASLRYMSLK GSSSLQRKDM TSSTASEIAT IGSVKSEDSV ALPRMDARTA ESLVSKWQKI KSQAFGRDHC IEMLPEVLDG RMLKIWTDRA
701: SETKQLGLVY DYTLLKLSVD SVTVSADGTR ALVEATLEES ACLSDLVHPE NNATDVRTYT TRYEAFWSKS GGWKITEGSV LAS

Best Arabidopsis Sequence Match ( AT5G42480.1 )
(BLAST)

001: MEALSHVGIG LSPFQLCRLP PATTKLRRSH NTSTTICSAS KWADRLLSDF NFTSDSSSSS FATATTTATL VSPPPSIDRP ERHVPIPIDF YQVLGAQTHF
101: LTDGIRRAFE ARVSKPPQFG FSDDALISRR QILQAACETL SNPRSRREYN EGLLDDEEAT VITDVPWDKV PGALCVLQEG GETEIVLRVG EALLKERLPK
201: SFKQDVVLVM ALAFLDVSRD AMALDPPDFI TGYEFVEEAL KLLQEEGASS LAPDLRAQID ETLEEITPRY VLELLGLPLG DDYAAKRLNG LSGVRNILWS
301: VGGGGASALV GGLTREKFMN EAFLRMTAAE QVDLFVATPS NIPAESFEVY EVALALVAQA FIGKKPHLLQ DADKQFQQLQ QAKVMAMEIP AMLYDTRNNW
401: EIDFGLERGL CALLIGKVDE CRMWLGLDSE DSQYRNPAIV EFVLENSNRD DNDDLPGLCK LLETWLAGVV FPRFRDTKDK KFKLGDYYDD PMVLSYLERV
501: EVVQGSPLAA AAAMARIGAE HVKASAMQAL QKVFPSRYTD RNSAEPKDVQ ETVFSVDPVG NNVGRDGEPG VFIAEAVRPS ENFETNDYAI RAGVSESSVD
601: ETTVEMSVAD MLKEASVKIL AAGVAIGLIS LFSQKYFLKS SSSFQRKDMV SSMESDVATI GSVRADDSEA LPRMDARTAE NIVSKWQKIK SLAFGPDHRI
701: EMLPEVLDGR MLKIWTDRAA ETAQLGLVYD YTLLKLSVDS VTVSADGTRA LVEATLEESA CLSDLVHPEN NATDVRTYTT RYEVFWSKSG WKITEGSVLA
801: S

Arabidopsis Description

ARC6Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FIG9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.