Factsheet for VIT_02s0033g00060.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0010g02140.t01
VIT_02s0033g00060.t01
VIT_19s0090g01320.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42480.1	VIT_01s0010g02140.t01	AT1G75010.1	19453460
AT5G42480.1	VIT_02s0033g00060.t01	AT5G42480.1	16146521
AT5G42480.1	VIT_19s0090g01320.t01	AT5G55280.1	16146521
AT5G42480.1	VIT_19s0090g01320.t01	AT5G55280.1	19453460

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g081070.2.1	Tomato	plastid	70.77	68.86
PGSC0003DMT400009646	Potato	plastid	70.14	67.76
KRH17386	Soybean	plastid	65.5	65.74
KRH05905	Soybean	plastid	64.62	64.05
Bra033637.1-P	Field mustard	mitochondrion, plastid	60.85	61.94
CDY22390	Canola	mitochondrion, plastid	60.85	61.94
CDY61131	Canola	plastid	60.6	61.76
AT5G42480.1	Thale cress	plastid	61.23	60.92
EES06197	Sorghum	plastid	54.08	56.56
Os02t0122400-01	Rice	plastid	54.33	56.31
TraesCS6A01G066200.3	Wheat	plastid	53.83	55.57
TraesCSU01G117700.1	Wheat	plastid	53.07	55.08
TraesCS6B01G089500.2	Wheat	plastid	52.57	54.84
GSMUA_Achr1P07790_001	Banana	endoplasmic reticulum, plasma membrane	59.72	54.28
HORVU6Hr1G012020.11	Barley	nucleus	53.58	51.88
Zm00001d053923_P003	Maize	plastid	51.69	41.2
VIT_17s0053g00090.t01	Wine grape	plastid	21.96	21.24

Protein Annotations

EntrezGene:100251728	wikigene:100251728	MapMan:13.6.1.2.5	EMBL:AM455689	ProteinID:CAN78894	ProteinID:CAN78894.1
ProteinID:CCB60316	ProteinID:CCB60316.1	InterPro:DUF4101	UniProt:F6I050	EMBL:FN596505	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009658	GO:GO:0009706	GO:GO:0009941
GO:GO:0009987	GO:GO:0010020	GO:GO:0016020	GO:GO:0016043	GO:GO:0031357	GO:GO:0043621
InterPro:IPR036869	InterPro:J_dom_sf	EntrezGene:LOC100251728	wikigene:LOC100251728	PFAM:PF13355	PANTHER:PTHR33925
PANTHER:PTHR33925:SF3	SUPFAM:SSF46565	UniParc:UPI000210A7BE	ArrayExpress:VIT_02s0033g00060	EnsemblPlantsGene:VIT_02s0033g00060	EnsemblPlants:VIT_02s0033g00060.t01
unigene:Vvi.17192	RefSeq:XP_002262674	RefSeq:XP_002262674.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr2:+:13419788..13426079

Molecular Weight (calculated)

87507.1 Da

IEP (calculated)

4.633

GRAVY (calculated)

-0.231

Length

797 amino acids

Sequence
(BLAST)

001: MAHLRLALYT PRLVPPPRNL RRPSKIKSQG GAPADTPGTA TAFSASKWAD RLLSDFQFLP PPPATTAASD RSTELTSLPP PPLAPPERDV SIPLHFYQVL
101: GAEAHFLGDG IRRAYEARVS KPPQYGYSQE ALISRRQILQ AACETLANPR SKREYSQGLA EDEVETIITQ VPWDKVPGAL CVLQEAGENE IVLHIGESLL
201: RERLPKSFKQ DVVLAMALAY VDLSRDAMAL SPPDFIKGCE VLERALKLLQ EEGASSLAPD LQAQIDETLE EITPRCVLEL LALPLSDEYR TRREEGLQGV
301: RNILWAVGGG GAAAVAGGFT REDFMNEAFL CMTAAEQVNL FAATPSNIPA ESFEVYGVAL ALVAQAFVGK KPHLIQDADN LFQQLQQTKI MTPGNPVSAY
401: TPGQNSEIDF ALERGLCSLL VGEIDECRSW LGLDNHSSPY RDPSIVEFVL ENSKDDHDND LLPGLCKLLE TWLMEVVFPR FRDTKCVQFK LGDYYDDPTV
501: LRYLERLEGV GGSPLAAAAA IARIGAEATA VLDNVKASAI QALQKVFPVD HGNENLRRED SGINNSVPVV ESEEPLQNPA RDDSANIAEI PKENSSDEIY
601: EQKLITEKIK DASVKIMCGG VVVGLMTLIG LKYLPAKNNS SILRKEVGSA MASDVTNVGL VENSEEVPRM DARFAEGLVR KWQSIKSQAL GPDHCLGKLP
701: EVLDGQMLKI WTDRAADIAQ HGWFWEYTLL NLTIDSVTVS LDGRRAMVEA TLEESARLTD TVHPEHNDSY STTYTTRYEM SCNSSGWKIT EGAVLKP

Best Arabidopsis Sequence Match ( AT5G42480.1 )
(BLAST)

001: MEALSHVGIG LSPFQLCRLP PATTKLRRSH NTSTTICSAS KWADRLLSDF NFTSDSSSSS FATATTTATL VSPPPSIDRP ERHVPIPIDF YQVLGAQTHF
101: LTDGIRRAFE ARVSKPPQFG FSDDALISRR QILQAACETL SNPRSRREYN EGLLDDEEAT VITDVPWDKV PGALCVLQEG GETEIVLRVG EALLKERLPK
201: SFKQDVVLVM ALAFLDVSRD AMALDPPDFI TGYEFVEEAL KLLQEEGASS LAPDLRAQID ETLEEITPRY VLELLGLPLG DDYAAKRLNG LSGVRNILWS
301: VGGGGASALV GGLTREKFMN EAFLRMTAAE QVDLFVATPS NIPAESFEVY EVALALVAQA FIGKKPHLLQ DADKQFQQLQ QAKVMAMEIP AMLYDTRNNW
401: EIDFGLERGL CALLIGKVDE CRMWLGLDSE DSQYRNPAIV EFVLENSNRD DNDDLPGLCK LLETWLAGVV FPRFRDTKDK KFKLGDYYDD PMVLSYLERV
501: EVVQGSPLAA AAAMARIGAE HVKASAMQAL QKVFPSRYTD RNSAEPKDVQ ETVFSVDPVG NNVGRDGEPG VFIAEAVRPS ENFETNDYAI RAGVSESSVD
601: ETTVEMSVAD MLKEASVKIL AAGVAIGLIS LFSQKYFLKS SSSFQRKDMV SSMESDVATI GSVRADDSEA LPRMDARTAE NIVSKWQKIK SLAFGPDHRI
701: EMLPEVLDGR MLKIWTDRAA ETAQLGLVYD YTLLKLSVDS VTVSADGTRA LVEATLEESA CLSDLVHPEN NATDVRTYTT RYEVFWSKSG WKITEGSVLA
801: S

Arabidopsis Description

ARC6Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FIG9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.