Factsheet for TraesCSU01G117700.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G488400.1
TraesCS2B01G516000.1
TraesCS2D01G488700.1
TraesCS5A01G356200.1
TraesCS5B01G358700.1
TraesCS5D01G365000.1
TraesCS6A01G066200.3
TraesCS6B01G089500.2
TraesCSU01G117700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42480.1	TraesCS5A01G356200.1	AT1G75010.1	19453460
AT5G42480.1	TraesCS5B01G358700.1	AT1G75010.1	19453460
AT5G42480.1	TraesCS5D01G365000.1	AT1G75010.1	19453460
AT5G42480.1	TraesCS6A01G066200.3	AT5G42480.1	16146521
AT5G42480.1	TraesCS6B01G089500.2	AT5G42480.1	16146521
AT5G42480.1	TraesCSU01G117700.1	AT5G42480.1	16146521
AT5G42480.1	TraesCS2A01G488400.1	AT5G55280.1	16146521
AT5G42480.1	TraesCS2B01G516000.1	AT5G55280.1	16146521
AT5G42480.1	TraesCS2D01G488700.1	AT5G55280.1	16146521
AT5G42480.1	TraesCS2A01G488400.1	AT5G55280.1	19453460
AT5G42480.1	TraesCS2B01G516000.1	AT5G55280.1	19453460
AT5G42480.1	TraesCS2D01G488700.1	AT5G55280.1	19453460

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G089500.2	Wheat	plastid	94.27	94.76
TraesCS6A01G066200.3	Wheat	plastid	91.93	91.45
HORVU6Hr1G012020.11	Barley	nucleus	91.8	85.66
Os02t0122400-01	Rice	plastid	81.12	81.01
EES06197	Sorghum	plastid	79.56	80.18
Zm00001d053923_P003	Maize	plastid	76.04	58.4
VIT_02s0033g00060.t01	Wine grape	mitochondrion	55.08	53.07
Solyc04g081070.2.1	Tomato	plastid	52.6	49.33
KRH17386	Soybean	plastid	50.91	49.24
PGSC0003DMT400009646	Potato	plastid	52.6	48.97
KRH05905	Soybean	plastid	50.39	48.13
Bra033637.1-P	Field mustard	mitochondrion, plastid	48.7	47.77
CDY22390	Canola	mitochondrion, plastid	48.7	47.77
CDY61131	Canola	plastid	48.18	47.31
GSMUA_Achr1P07790_001	Banana	endoplasmic reticulum, plasma membrane	53.65	46.98
AT5G42480.1	Thale cress	plastid	47.79	45.82

Protein Annotations

MapMan:13.6.1.2.5	InterPro:DUF4101	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536
GO:GO:0009658	GO:GO:0009706	GO:GO:0009941	GO:GO:0009987	GO:GO:0010020	GO:GO:0016020
GO:GO:0016043	GO:GO:0031357	GO:GO:0043621	InterPro:IPR036869	InterPro:J_dom_sf	PFAM:PF13355
PANTHER:PTHR33925	PANTHER:PTHR33925:SF3	SUPFAM:SSF46565	EnsemblPlantsGene:TraesCSU01G117700	EnsemblPlants:TraesCSU01G117700.1	SEG:seg

Description

No Description!

Coordinates

chrUn:-:101380120..101388238

Molecular Weight (calculated)

84308.5 Da

IEP (calculated)

4.600

GRAVY (calculated)

-0.162

Length

768 amino acids

Sequence
(BLAST)

001: MEGLHNLLAR PNSAPLAFSL PRPRRRPPPP ASALACRAAS RWADRLFADF HLLPAAAAAP DPPAAAPAGV SAAPCVPLFP DAADRSLPVQ VDFYKVLGAE
101: PHFLSDGVRR AFEARAAKPP QYGYSTDTLV GRRQILQLAH DTLTNQSSRT EYDRALSEDR DAALTLDVAW DKVPGVLCAL QEAGEAQAVL AIGEHLLEDR
201: PPKRFKQDVV LAMALAYVDI SRDAMAASPP DVIRCCEVLE RALKLLQEDG AINLAPGLLS QIDETLEEIT PRCVLELLAL PLDEKHQIER QEGLRGVRNI
301: LWSVGRGGIA TVGGGFSREA YMNEAFLQMT SAEQMDFFSK TPNSIPPEWF EIYSVALANV AQAIVSKRPE LIMMADDLFE QLQKFNIGSQ YAYDNEMDLA
401: LERALCSLLV GDISNCRIWL AIDNESSAHR DPKIVEFIVN NSTIDQQEND LLPGLCKLLE TWLVSEVFPR SRDTRGMQFT LGDYYDDPKV LSYLEMMEGG
501: GASHLAAAAA IAKLGAQATA ALGTVKSSAV QAFNKIFPLI EQLDRSAMEN PNDGLEEPVS KFDQKNIMGF DIHDSKNAAL KIVCASALFA LLTVIGLKYL
601: PRNKVLPAIR SEHESMTVAN VVDPVDDDAP DEPIQIPRMD AKLAEDIVRK WQSIKTKALG SDHSVESLQE VLDGNMLKVW TDRAAEIGRK GWFWDYTLSD
701: VAIDSITVSL DGRRATVEAT IEEAGQLIDA TDPKNNDSYD TKYTTRYEMT FTGLGGWKIT EGAVLKSS

Best Arabidopsis Sequence Match ( AT5G42480.1 )
(BLAST)

001: MEALSHVGIG LSPFQLCRLP PATTKLRRSH NTSTTICSAS KWADRLLSDF NFTSDSSSSS FATATTTATL VSPPPSIDRP ERHVPIPIDF YQVLGAQTHF
101: LTDGIRRAFE ARVSKPPQFG FSDDALISRR QILQAACETL SNPRSRREYN EGLLDDEEAT VITDVPWDKV PGALCVLQEG GETEIVLRVG EALLKERLPK
201: SFKQDVVLVM ALAFLDVSRD AMALDPPDFI TGYEFVEEAL KLLQEEGASS LAPDLRAQID ETLEEITPRY VLELLGLPLG DDYAAKRLNG LSGVRNILWS
301: VGGGGASALV GGLTREKFMN EAFLRMTAAE QVDLFVATPS NIPAESFEVY EVALALVAQA FIGKKPHLLQ DADKQFQQLQ QAKVMAMEIP AMLYDTRNNW
401: EIDFGLERGL CALLIGKVDE CRMWLGLDSE DSQYRNPAIV EFVLENSNRD DNDDLPGLCK LLETWLAGVV FPRFRDTKDK KFKLGDYYDD PMVLSYLERV
501: EVVQGSPLAA AAAMARIGAE HVKASAMQAL QKVFPSRYTD RNSAEPKDVQ ETVFSVDPVG NNVGRDGEPG VFIAEAVRPS ENFETNDYAI RAGVSESSVD
601: ETTVEMSVAD MLKEASVKIL AAGVAIGLIS LFSQKYFLKS SSSFQRKDMV SSMESDVATI GSVRADDSEA LPRMDARTAE NIVSKWQKIK SLAFGPDHRI
701: EMLPEVLDGR MLKIWTDRAA ETAQLGLVYD YTLLKLSVDS VTVSADGTRA LVEATLEESA CLSDLVHPEN NATDVRTYTT RYEVFWSKSG WKITEGSVLA
801: S

Arabidopsis Description

ARC6Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FIG9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.