Factsheet for TraesCS5A01G356200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G488400.1
TraesCS2A01G555400.1
TraesCS2B01G516000.1
TraesCS2B01G588400.1
TraesCS2D01G488700.1
TraesCS2D01G559100.1
TraesCS4A01G474300.1
TraesCS5A01G356200.1
TraesCS5B01G358700.1
TraesCS5D01G365000.1
TraesCS6A01G066200.3
TraesCS6B01G089500.2
TraesCS7A01G017400.2
TraesCS7D01G014700.1
TraesCSU01G117700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G75010.1	TraesCS5A01G356200.1	AT1G75010.1	17304239
AT1G75010.1	TraesCS5B01G358700.1	AT1G75010.1	17304239
AT1G75010.1	TraesCS5D01G365000.1	AT1G75010.1	17304239
AT1G75010.1	TraesCS2A01G555400.1	AT3G19180.1	19564892
AT1G75010.1	TraesCS2B01G588400.1	AT3G19180.1	19564892
AT1G75010.1	TraesCS2D01G559100.1	AT3G19180.1	19564892
AT1G75010.1	TraesCS4A01G474300.1	AT5G24020.1	17304239
AT1G75010.1	TraesCS7A01G017400.2	AT5G24020.1	17304239
AT1G75010.1	TraesCS7D01G014700.1	AT5G24020.1	17304239
AT1G75010.1	TraesCS6A01G066200.3	AT5G42480.1	19453460
AT1G75010.1	TraesCS6B01G089500.2	AT5G42480.1	19453460
AT1G75010.1	TraesCSU01G117700.1	AT5G42480.1	19453460
AT1G75010.1	TraesCS2A01G488400.1	AT5G55280.1	17304239
AT1G75010.1	TraesCS2B01G516000.1	AT5G55280.1	17304239
AT1G75010.1	TraesCS2D01G488700.1	AT5G55280.1	17304239

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G365000.1	Wheat	plastid	97.14	97.4
TraesCS5B01G358700.1	Wheat	plastid	96.87	96.87
HORVU5Hr1G088120.2	Barley	plastid	90.19	83.38
Os09t0555600-01	Rice	plastid	71.8	71.22
Zm00001d021407_P001	Maize	plastid	71.12	69.14
OQU89910	Sorghum	plastid	71.12	67.53
CDY37266	Canola	mitochondrion	4.36	47.06
VIT_01s0010g02140.t01	Wine grape	mitochondrion	36.1	38.07
Bra015875.1-P	Field mustard	plastid	35.15	34.91
AT1G75010.1	Thale cress	plastid	34.88	34.55
KRH36043	Soybean	plastid	35.56	33.72
Solyc01g007880.2.1	Tomato	plastid	35.83	33.67
CDX73132	Canola	plastid	34.47	32.94
CDY64472	Canola	endoplasmic reticulum, extracellular	33.92	32.05
GSMUA_Achr2P03680_001	Banana	nucleus	46.05	29.81
CDY46020	Canola	golgi	0.14	5.88

Protein Annotations

MapMan:13.6.1.2.4	Gene3D:2.20.110.10	Gene3D:3.40.50.1440	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0009536
GO:GO:0009570	GO:GO:0009707	GO:GO:0009987	GO:GO:0010020	GO:GO:0016020	GO:GO:0016043
GO:GO:0035452	GO:GO:0043621	InterPro:IPR036525	InterPro:MORN	PFAM:PF02493	PANTHER:PTHR23084
PANTHER:PTHR23084:SF204	SMART:SM00698	SUPFAM:SSF52490	SUPFAM:SSF82185	EnsemblPlantsGene:TraesCS5A01G356200	EnsemblPlants:TraesCS5A01G356200.1
InterPro:Tubulin/FtsZ_GTPase_sf	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5A:+:558667682..558676097

Molecular Weight (calculated)

81037.7 Da

IEP (calculated)

6.324

GRAVY (calculated)

-0.330

Length

734 amino acids

Sequence
(BLAST)

001: MAASLRGGLV VPLPPPLASP RRLAPSPRRR RRRLPRVRAA AAEPVEVVGV GSRKDAVIDF CLGSRTLSST PIRFWTVHVD NSEVQFIPRV QDTETAVGDL
101: ERPLSLHPCP SAVIIVASAG QEADQIAALE LLSATKSADN LAASIFLKPF CFEGQRRQLE ASDLIVKFQA CSNFHIVIEA DSLLETEVET LAEALESANN
201: AVLSTISMIS IMMSGFNQMF WSSLDAQIKE VDPEEVGKLL KSYGEARVGF GAGYNVQSAI KQAVLHCPFL RGGIKDLNNV VFLSLTTSRV LAESDMISIL
301: HIFRRVTGFN KDIIFSRNSE PDLEPKLIVV SLLTIRNARD ENVASVKDGF LLSMALHFPF ISSLMGGDTQ ELRQARLNHS FSKLPDSGLS LADQGLPEHF
401: SVSNDATVSN LYSDKIENIK SERESDNNNG RIHPEFKEAN LESDGETSID VGREDPSSQQ ERNFWSNVPA FGIAQLWAKE RTTTGRGNKR NELDYITLPV
501: GVKSLEVQYD HSPNTQPETR NATDSTPLST GHAVSGASLS GVGLEKVMEI CSSAAAFLKG RMDKSRKRGS AASRAASMLD AEREAEKTWS PIVEIQFGEG
601: TYRGRCQEGV PEGKGRLTYS DGSIYDGLWR YGKRYGLGTL YYSNGDVFHG TWRDDLIHGK GWYYFHSGDR WFANFWKGKA NGEGRFYAKD GSILFGHFQN
701: GWRHGECLLI DGNGSRWLEV WDDGVLTGRT KLEE

Best Arabidopsis Sequence Match ( AT1G75010.1 )
(BLAST)

001: MPISMELPVF STLRVPLFSR LALLPTFGVP FSSLGATTRL NCTSRKARRI CVMCLVRDSA PIETCERAGE DGSDEFIEVL VIGSRKESIM DSCLDSPFPS
101: LPLRFWSISK DSSGGLVLQQ RLNHQDNALK TMNPIELLQS RPRAFILVAS AGYGSDQVEA INILSAVRSG GNLAVAVLLK PFSFEGRKRL EEVNELARKL
201: QQHTNFCIDI DIEVLLQKDL VTLDEALRNA NNAVSMAINA ASALISGMHG NFIDVMHKDL KELEGSEVKT ILESYKEAKV GFGVGHNLKT SILRAIYDCP
301: FFRPGLKDLN AIICIVASSV PLQKKDVKTI LRTFRQTMEY TGDIIVSTVH EPDLEPKVRV TTFFILSSSE VETSNKGNIF SGLVPFVLNI FTRYRSQLQK
401: ETNIGLGETP VSIKDSADST DVKTSNQNIE EFEIDSEDLL EVSENGDDSE YPLKEGEPSR NSRLDLKDEN VEDFGAIQRE PIANWSMDQG YQIEQKWQAD
501: SGDTAVLSLG IVNLPVGVRP SKKLNSNLSV ASQLSRKADS REESFFNPNG STKDSSDTAS TLLSEKYADF TKQRNLSARA SSMLEAERDS SKRWSPILEM
601: QYRGGLFKGR CQGGLPEGKG RLVLGDGSIY DGMWHNGKRS GLGTFYFKNG DVFQGTWRED LIHGKGWFYF HKGDRWFANF WKGKASGEGR FYSKSGEIFF
701: GHFKDGWRHG QFLCIDLDGT RYSETWDDGV LIDRKQVDAG D

Arabidopsis Description

ARC3Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3 [Source:UniProtKB/Swiss-Prot;Acc:Q6F6B5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.