Factsheet for TraesCS2B01G588400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G555400.1
TraesCS2B01G588400.1
TraesCS2D01G559100.1
TraesCS5A01G356200.1
TraesCS5B01G358700.1
TraesCS5D01G365000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G19180.1	TraesCS5A01G356200.1	AT1G75010.1	19564892
AT3G19180.1	TraesCS5B01G358700.1	AT1G75010.1	19564892
AT3G19180.1	TraesCS5D01G365000.1	AT1G75010.1	19564892
AT3G19180.1	TraesCS2A01G555400.1	AT3G19180.1	19564892
AT3G19180.1	TraesCS2B01G588400.1	AT3G19180.1	19564892
AT3G19180.1	TraesCS2D01G559100.1	AT3G19180.1	19564892

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G119920.8	Barley	cytosol	84.53	95.72
TraesCS2A01G555400.1	Wheat	plastid	91.23	92.13
TraesCS2D01G559100.1	Wheat	plastid	90.01	90.79
HORVU6Hr1G028890.1	Barley	cytosol	9.62	88.76
HORVU7Hr1G022620.1	Barley	cytosol	9.38	86.52
HORVU6Hr1G023350.1	Barley	cytosol	9.38	86.52
HORVU5Hr1G017780.1	Barley	cytosol	9.38	86.52
HORVU5Hr1G052700.1	Barley	cytosol	9.14	86.21
HORVU5Hr1G052680.1	Barley	cytosol	9.14	86.21
HORVU1Hr1G043130.1	Barley	cytosol	9.26	85.39
HORVU4Hr1G064930.1	Barley	cytosol	9.14	84.27
Zm00001d001844_P001	Maize	plastid	74.3	76.25
EES13095	Sorghum	plastid	73.93	76.07
GSMUA_Achr1P15150_001	Banana	plastid	50.43	50.12
VIT_17s0053g00090.t01	Wine grape	plastid	48.84	48.66
Solyc03g098610.2.1	Tomato	cytosol	48.36	47.83
PGSC0003DMT400026299	Potato	cytosol	48.23	47.71
GSMUA_Achr3P14180_001	Banana	mitochondrion	48.23	47.54
AT3G19180.1	Thale cress	plastid	47.26	47.37
CDX92306	Canola	plasma membrane	45.8	46.71
Bra022392.1-P	Field mustard	plasma membrane, plastid	45.68	46.47
CDX99260	Canola	plastid	45.55	46.46
KRH09390	Soybean	plasma membrane, plastid	44.46	44.95
KRH38887	Soybean	plastid	43.85	44.34
TraesCS6B01G089500.2	Wheat	plastid	20.34	21.86
Os04t0675700-00	Rice	cytosol	3.29	20.77

Protein Annotations

EnsemblPlants:TraesCS2B01G588400.1	EnsemblPlantsGene:TraesCS2B01G588400	InterPro:DUF4101	ncoils:Coil	PANTHER:PTHR33925	PANTHER:PTHR33925:SF2
PFAM:PF13355	SEG:seg	MapMan:13.6.1.2.6	:	:	:

Description

No Description!

Coordinates

chr2B:-:775168731..775173557

Molecular Weight (calculated)

89068.6 Da

IEP (calculated)

6.773

GRAVY (calculated)

-0.274

Length

821 amino acids

Sequence
(BLAST)

001: MAMPTPAAAL LHPSSAVAAP SPSTSSSARR GAPSSSSSSS SARRGGNASA GNAAGARRGA AVRARVAGAA APVTAASAAE GRGRQEAPAA PAVEIPVTCY
101: QILGVTEKAE KDEIVKSAIE LRKSEIEDGY TEEVSACRQA LLLDVRDKLL FEQEYAGSTR AKVPPRSSLH IPWSWLPAAL CVLQEVGEEK LVLDIGQAAL
201: RRPDSKPYAH DVLLAMALAE CSIAKASFEK SKVSLGFEAL ACAQYLLRKK PSLEKMPLLE QIEESLEELA PACTLEVLSL PRTPENSERR RGAIAALCEL
301: LGQGLDVESS CRVHDWPYFL GQAMDKLLAT EIVELLSWDS LATTRKNKKS LESQSQRVVV DFNCFYRAML AHLATGFSTR QTELISKAKT ICECLVASEN
401: TDLKFEESFC SFLLGEESGA TVFEKLQQLQ SNGSSNSRNY GLAKKKDSSD KVTVNQSLEL WLKEVALSRF ADTRDCPPSL VNFFAAPKRL ISTSKQKLGA
501: TRRVLLSSQT SPSASACNRT SGQQNPRLNS TSHLGEAVKQ LAPTTLGGQG HSSTDRPVNG LSTTSVPLKR NPGSHPVRTL ESWGLTGDVI GKIAYTAVLG
601: FALFGTLKLV RFQFGNTKPA SSTRESAVTS SLNEASLSEG SFISSRVREQ FEKLSKMLWL SNRLHSRGER SDLSPGSGDV AAIARKERMS LQEAEALVKQ
701: WQDIKSEALG PDYEIDMLSE VLDGSMLSKW QDLALSAKDQ SCYWRFVLLN LSVVRAEILL DEAGDGEVAE IDAVLEEAAE LVDDSQPKKP SYYSTYEVQY
801: TLRRQDDRSW KICEAAVRDL S

Best Arabidopsis Sequence Match ( AT3G19180.1 )
(BLAST)

001: MPVAYTFPVL PSSCLLCGIS NRSTSFVVDR PELQISGLLV VRSESGEFFG SGLSLRRFQR EGRRRLNAAG GGIHVVDNAP SRTSSLAAST STIELPVTCY
101: QLIGVSEQAE KDEVVKSVIN LKKTDAEEGY TMEAAAARQD LLMDVRDKLL FESEYAGNLK EKIAPKSPLR IPWAWLPGAL CLLQEVGQEK LVLDIGRAAL
201: RNLDSKPYIH DIFLSMALAE CAIAKAAFEV NKVSQGFEAL ARAQSFLKSK VTLGKLALLT QIEESLEELA PPCTLDLLGL PRTPENAERR RGAIAALREL
301: LRQGLSVEAS CQIQDWPCFL SQAISRLLAT EIVDLLPWDD LAITRKNKKS LESHNQRVVI DFNCFYMVLL GHIAVGFSGK QNETINKAKT ICECLIASEG
401: VDLKFEEAFC SFLLKQGSEA EALEKLKQLE SNSDSAVRNS ILGKESRSTS ATPSLEAWLM ESVLANFPDT RGCSPSLANF FRAEKKYPEN KKMGSPSIMN
501: HKTNQRPLST TQFVNSSQHL YTAVEQLTPT DLQSPVVSAK NNDETSASMP SVQLKRNLGV HKNKIWDEWL SQSSLIGRVS VVALLGCTVF FSLKLSGIRS
601: GRLQSMPISV SARPHSESDS FLWKTESGNF RKNLDSVNRN GIVGNIKVLI DMLKMHCGEH PDALYLKSSG QSATSLSHSA SELHKRPMDT EEAEELVRQW
701: ENVKAEALGP THQVYSLSEV LDESMLVQWQ TLAQTAEAKS CYWRFVLLHL EVLQAHIFED GIAGEAAEIE ALLEEAAELV DESQPKNAKY YSTYKIRYIL
801: KKQEDGLWKF CQSDIQIQK

Arabidopsis Description

CDP1Plastid division protein CDP1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8VY16]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.