CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid

Predictor Summary:

plastid 5
cytosol 1
nucleus 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 3
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane, plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH09390
KRH36043
KRH38887

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G19180.1	KRH36043	AT1G75010.1	19564892
AT3G19180.1	KRH09390	AT3G19180.1	19564892
AT3G19180.1	KRH38887	AT3G19180.1	19564892

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH38887	Soybean	plastid	94.7	94.7
HORVU6Hr1G028890.1	Barley	cytosol	6.28	57.3
HORVU7Hr1G022620.1	Barley	cytosol	6.16	56.18
HORVU1Hr1G043130.1	Barley	cytosol	6.03	55.06
HORVU4Hr1G064930.1	Barley	cytosol	6.03	55.06
HORVU5Hr1G017780.1	Barley	cytosol	6.03	55.06
VIT_17s0053g00090.t01	Wine grape	plastid	55.17	54.37
HORVU5Hr1G052680.1	Barley	cytosol	5.79	54.02
HORVU5Hr1G052700.1	Barley	cytosol	5.79	54.02
HORVU6Hr1G023350.1	Barley	cytosol	5.91	53.93
Solyc03g098610.2.1	Tomato	cytosol	53.57	52.41
PGSC0003DMT400026299	Potato	cytosol	52.96	51.81
Bra022392.1-P	Field mustard	plasma membrane, plastid	51.35	51.67
CDX99260	Canola	plastid	51.11	51.55
CDX92306	Canola	plasma membrane	50.74	51.18
AT3G19180.1	Thale cress	plastid	49.75	49.33
HORVU2Hr1G119920.8	Barley	cytosol	43.23	48.41
GSMUA_Achr1P15150_001	Banana	plastid	47.91	47.09
EES13095	Sorghum	plastid	45.07	45.86
Zm00001d001844_P001	Maize	plastid	44.34	45.0
TraesCS2B01G588400.1	Wheat	plastid	44.95	44.46
TraesCS2D01G559100.1	Wheat	plastid	44.46	44.35
TraesCS2A01G555400.1	Wheat	plastid	44.34	44.28
GSMUA_Achr3P14180_001	Banana	mitochondrion	44.95	43.82
KRH17386	Soybean	plastid	20.32	20.78
KRH05905	Soybean	plastid	20.07	20.27
Os04t0675700-00	Rice	cytosol	2.22	13.85

Protein Annotations

EMBL:ACUP02010276	EnsemblPlants:KRH09390	EnsemblPlantsGene:GLYMA_16G213100	EntrezGene:100818147	InterPro:DUF4101	ncoils:Coil
PANTHER:PTHR33925	PANTHER:PTHR33925:SF7	PFAM:PF13355	ProteinID:KRH09390	ProteinID:KRH09390.1	SEG:seg
UniParc:UPI000233F06C	UniProt:I1MQH2	MapMan:13.6.1.2.6	:	:	:

Description

hypothetical protein

Coordinates

chr16:+:37126159..37132422

Molecular Weight (calculated)

90050.2 Da

IEP (calculated)

6.736

GRAVY (calculated)

-0.195

Length

812 amino acids

Sequence
(BLAST)

001: MAFTYAAAIA PSIYGIARIG YCDQKVSLAG YHGEVNTTSF CVSSHAGRSD VLLERRKLKL ADTRIVENTQ MKSSAEIEIP VSCYQLIGVP DRAEKDEIVK
101: AVMGLKNAEI DEGYTIDVVA ARQDLLMDVR DKLLFEPEYA GNLREKIPPK SSLQIPWSWL PGALCLLQEV GESKLVLEIG QTSIRHQNAK PYTDDLILSM
201: ALAECAVAKI GFEKKKVSQG FEALARAQCL LRSKPSLAKM TLLSQIEESL EELAPACTLE LLSMPHAPEN VDRRRGAISA LRELLRQGLD VEASCQVQDW
301: PSFLSQAFDS LLAKEIVDLL PWDNLAVMRK NKKTIESQNL RAVIDSNCFY RVFKAHIAIG FSSKQKELIN KAKGICECLI ASEGIDLKFE EAFCLFLLGQ
401: GTEAEVVEKL KQLELSSNSK NISVLGKAIM DASAVNPSLE MWLKDSVLAL YPDTKDCSPA LANFFNAQQK FSGSKNSKGA QQMLPTICHR PLSSSGSLER
501: RDVEESRSYM SSSPNLGFAV KQLTPTDLRS SLLSGRNETG SNPVESPVQV KRNLGSHRNS GIWHSYFPQG HIFERITYLT VLGCIAFASI KLSGIGLSKT
601: LTGSHWASTK ANDNIAWTAD SADYPVVPAY IRQSTMANKV KRILSMFKIL LLHQSGTGNH SDLHTTLTSS SYPINVSRRL MPVEEAETMV RQWQTIKAEA
701: LGPSHEVNCL AQVLDESMLA QWKGLANAAK ERSCYWRFLL LKLSIIRADI LSDGNGDDMA EIEALLEEAS ELVDGSQQKN PNYYLTYKVK YVMKRQDDGS
801: WKFCENDIME TP

Best Arabidopsis Sequence Match ( AT3G19180.1 )
(BLAST)

001: MPVAYTFPVL PSSCLLCGIS NRSTSFVVDR PELQISGLLV VRSESGEFFG SGLSLRRFQR EGRRRLNAAG GGIHVVDNAP SRTSSLAAST STIELPVTCY
101: QLIGVSEQAE KDEVVKSVIN LKKTDAEEGY TMEAAAARQD LLMDVRDKLL FESEYAGNLK EKIAPKSPLR IPWAWLPGAL CLLQEVGQEK LVLDIGRAAL
201: RNLDSKPYIH DIFLSMALAE CAIAKAAFEV NKVSQGFEAL ARAQSFLKSK VTLGKLALLT QIEESLEELA PPCTLDLLGL PRTPENAERR RGAIAALREL
301: LRQGLSVEAS CQIQDWPCFL SQAISRLLAT EIVDLLPWDD LAITRKNKKS LESHNQRVVI DFNCFYMVLL GHIAVGFSGK QNETINKAKT ICECLIASEG
401: VDLKFEEAFC SFLLKQGSEA EALEKLKQLE SNSDSAVRNS ILGKESRSTS ATPSLEAWLM ESVLANFPDT RGCSPSLANF FRAEKKYPEN KKMGSPSIMN
501: HKTNQRPLST TQFVNSSQHL YTAVEQLTPT DLQSPVVSAK NNDETSASMP SVQLKRNLGV HKNKIWDEWL SQSSLIGRVS VVALLGCTVF FSLKLSGIRS
601: GRLQSMPISV SARPHSESDS FLWKTESGNF RKNLDSVNRN GIVGNIKVLI DMLKMHCGEH PDALYLKSSG QSATSLSHSA SELHKRPMDT EEAEELVRQW
701: ENVKAEALGP THQVYSLSEV LDESMLVQWQ TLAQTAEAKS CYWRFVLLHL EVLQAHIFED GIAGEAAEIE ALLEEAAELV DESQPKNAKY YSTYKIRYIL
801: KKQEDGLWKF CQSDIQIQK

Arabidopsis Description

CDP1Plastid division protein CDP1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8VY16]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.