CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73132
CDX92306
CDX99260
CDY64472

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G19180.1	CDX73132	AT1G75010.1	19564892
AT3G19180.1	CDY64472	AT1G75010.1	19564892
AT3G19180.1	CDX92306	AT3G19180.1	19564892
AT3G19180.1	CDX99260	AT3G19180.1	19564892

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022392.1-P	Field mustard	plasma membrane, plastid	97.27	97.03
CDX99260	Canola	plastid	96.77	96.77
AT3G19180.1	Thale cress	plastid	79.25	77.9
HORVU6Hr1G028890.1	Barley	cytosol	6.09	55.06
HORVU5Hr1G017780.1	Barley	cytosol	6.09	55.06
VIT_17s0053g00090.t01	Wine grape	plastid	55.78	54.49
HORVU7Hr1G022620.1	Barley	cytosol	5.96	53.93
HORVU1Hr1G043130.1	Barley	cytosol	5.84	52.81
PGSC0003DMT400026299	Potato	cytosol	54.16	52.53
Solyc03g098610.2.1	Tomato	cytosol	53.54	51.93
HORVU5Hr1G052700.1	Barley	cytosol	5.59	51.72
HORVU5Hr1G052680.1	Barley	cytosol	5.59	51.72
HORVU4Hr1G064930.1	Barley	cytosol	5.71	51.69
HORVU6Hr1G023350.1	Barley	cytosol	5.71	51.69
KRH38887	Soybean	plastid	51.43	50.99
KRH09390	Soybean	plasma membrane, plastid	51.18	50.74
HORVU2Hr1G119920.8	Barley	cytosol	44.22	49.1
GSMUA_Achr1P15150_001	Banana	plastid	47.58	46.37
EES13095	Sorghum	plastid	45.96	46.37
TraesCS2B01G588400.1	Wheat	plastid	46.71	45.8
TraesCS2A01G555400.1	Wheat	plastid	45.96	45.51
Zm00001d001844_P001	Maize	plastid	45.22	45.5
TraesCS2D01G559100.1	Wheat	plastid	45.71	45.21
GSMUA_Achr3P14180_001	Banana	mitochondrion	44.22	42.74
CDY61131	Canola	plastid	19.38	19.95
CDY22390	Canola	mitochondrion, plastid	19.25	19.8
Os04t0675700-00	Rice	cytosol	2.48	15.38

Protein Annotations

EnsemblPlants:CDX92306	EnsemblPlantsGene:GSBRNA2T00154033001	InterPro:DUF4101	ncoils:Coil	PANTHER:PTHR33925	PANTHER:PTHR33925:SF2
PFAM:PF13355	ProteinID:CDX92306	ProteinID:CDX92306.1	SEG:seg	UniParc:UPI0004EE1EB3	MapMan:13.6.1.2.6

Description

BnaA05g21010D

Coordinates

chrLK031871:+:1388438..1393052

Molecular Weight (calculated)

89119.8 Da

IEP (calculated)

7.340

GRAVY (calculated)

-0.209

Length

805 amino acids

Sequence
(BLAST)

001: MPVLYTFPVL PSSLLRGISN RGTSIILHPP EVQISCFLVA RSDPGEFDGF SFSSRRRRLN AGGGGAHVVD NAPSRTSSLA ASTSTIEIPV TCYQLIGVSE
101: KAEKDEVVKS VLNLKKADAE EGYTMEAAAA RQDLLMDVRD KLLFEPEYAG NLKENITPKS PLRIPWAWLP AALCLLQEVG EEKLVLDIGR SVLRHLDSKP
201: YIHDIFLAMA LSECAVAKDA FEANKVSQGF EALARAQSFL KSKVTLGKLA LLSQIEESLE ELAAPCTLDL LGLPPLPENA ERRRGAVAAL RELLRQGLDV
301: EASCQIQDWP CFLTQAISRL LATEIVDLLP WDTLAITRKN KKSLESHNQR VVIDFNCFYL VLVAHIAVGF SVKQTDKINK AKSICECLIA SEGVDLKFEE
401: AFCSFLLNQG SEAEALEKLK QLDSNSDSAV RNSILGKELR TTSATPSLEA WLKDSVLANF PDTRGCSPSL ANFFRAEKKY PVNKKMGSPP IINHKTNQRP
501: ISSMQFMNSS QHIYTAVEQL APTNLQSPVA STKNIDESGA SRPSVQLKRN LGLQQNKIWN GWLSQSSLIQ RVSVAALLGC TVFFSLKLTG IRSGRLQSLP
601: TWGSAKPHLE SDSGNFRRNL ASVNRKGVVG NIKTLLDMLK RHHGEHSDAL YLKSSGLSAT LSHPTSEVHK RPMLTEDAEE LVRQWENIKA EALGPTHQVY
701: SLPEVLDEAM LIQWQTLAQT AKAKSCYWRF VLLNLEILQA HISTDGSIAG ETAEIEAFLE EAAELVDESQ PKNAKYYSTY KIRYTLKKQE DGSWRFCQSD
801: IQIQK

Best Arabidopsis Sequence Match ( AT3G19180.1 )
(BLAST)

001: MPVAYTFPVL PSSCLLCGIS NRSTSFVVDR PELQISGLLV VRSESGEFFG SGLSLRRFQR EGRRRLNAAG GGIHVVDNAP SRTSSLAAST STIELPVTCY
101: QLIGVSEQAE KDEVVKSVIN LKKTDAEEGY TMEAAAARQD LLMDVRDKLL FESEYAGNLK EKIAPKSPLR IPWAWLPGAL CLLQEVGQEK LVLDIGRAAL
201: RNLDSKPYIH DIFLSMALAE CAIAKAAFEV NKVSQGFEAL ARAQSFLKSK VTLGKLALLT QIEESLEELA PPCTLDLLGL PRTPENAERR RGAIAALREL
301: LRQGLSVEAS CQIQDWPCFL SQAISRLLAT EIVDLLPWDD LAITRKNKKS LESHNQRVVI DFNCFYMVLL GHIAVGFSGK QNETINKAKT ICECLIASEG
401: VDLKFEEAFC SFLLKQGSEA EALEKLKQLE SNSDSAVRNS ILGKESRSTS ATPSLEAWLM ESVLANFPDT RGCSPSLANF FRAEKKYPEN KKMGSPSIMN
501: HKTNQRPLST TQFVNSSQHL YTAVEQLTPT DLQSPVVSAK NNDETSASMP SVQLKRNLGV HKNKIWDEWL SQSSLIGRVS VVALLGCTVF FSLKLSGIRS
601: GRLQSMPISV SARPHSESDS FLWKTESGNF RKNLDSVNRN GIVGNIKVLI DMLKMHCGEH PDALYLKSSG QSATSLSHSA SELHKRPMDT EEAEELVRQW
701: ENVKAEALGP THQVYSLSEV LDESMLVQWQ TLAQTAEAKS CYWRFVLLHL EVLQAHIFED GIAGEAAEIE ALLEEAAELV DESQPKNAKY YSTYKIRYIL
801: KKQEDGLWKF CQSDIQIQK

Arabidopsis Description

CDP1Plastid division protein CDP1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8VY16]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.