CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

nucleus 2
plastid 1
endoplasmic reticulum 3
extracellular 3
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73132
CDX80403
CDX88064
CDX92306
CDX99260
CDY06595
CDY11108
CDY17316
CDY19897
CDY20776
CDY22390
CDY61131
CDY64472

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G75010.1	CDX73132	AT1G75010.1	17304239
AT1G75010.1	CDY64472	AT1G75010.1	17304239
AT1G75010.1	CDX92306	AT3G19180.1	19564892
AT1G75010.1	CDX99260	AT3G19180.1	19564892
AT1G75010.1	CDX80403	AT5G24020.1	17304239
AT1G75010.1	CDX88064	AT5G24020.1	17304239
AT1G75010.1	CDY11108	AT5G24020.1	17304239
AT1G75010.1	CDY22390	AT5G42480.1	19453460
AT1G75010.1	CDY61131	AT5G42480.1	19453460
AT1G75010.1	CDY06595	AT5G55280.1	17304239
AT1G75010.1	CDY17316	AT5G55280.1	17304239
AT1G75010.1	CDY19897	AT5G55280.1	17304239
AT1G75010.1	CDY20776	AT5G55280.1	17304239

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra015875.1-P	Field mustard	plastid	81.72	85.93
CDX73132	Canola	plastid	82.63	83.59
AT1G75010.1	Thale cress	plastid	72.84	76.38
CDY37266	Canola	mitochondrion	5.66	64.71
VIT_01s0010g02140.t01	Wine grape	mitochondrion	41.7	46.55
KRH36043	Soybean	plastid	39.12	39.28
Os09t0555600-01	Rice	plastid	33.72	35.41
Zm00001d021407_P001	Maize	plastid	33.72	34.7
OQU89910	Sorghum	plastid	33.98	34.15
TraesCS5D01G365000.1	Wheat	plastid	32.05	34.02
TraesCS5A01G356200.1	Wheat	plastid	32.05	33.92
TraesCS5B01G358700.1	Wheat	plastid	31.92	33.79
HORVU5Hr1G088120.2	Barley	plastid	32.82	32.12
GSMUA_Achr2P03680_001	Banana	nucleus	35.39	24.25
CDY46020	Canola	golgi	0.0	0.0

Protein Annotations

MapMan:13.6.1.2.4	Gene3D:2.20.110.10	Gene3D:3.40.50.1440	GO:A0A078JFM6	UniProt:A0A078JFM6	EnsemblPlants:CDY64472
ProteinID:CDY64472	ProteinID:CDY64472.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0016787
EnsemblPlantsGene:GSBRNA2T00041258001	InterPro:IPR036525	InterPro:MORN	PFAM:PF02493	PRINTS:PR00423	PANTHER:PTHR43215
SMART:SM00698	SUPFAM:SSF52490	SUPFAM:SSF82185	SignalP:SignalP-noTM	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_FtsZ_GTPase
UniParc:UPI0004EED3CB	SEG:seg	:	:	:	:

Description

BnaAnng19360DBnaAnng19360D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JFM6]

Coordinates

chrLK034471:+:18390..22793

Molecular Weight (calculated)

86134.5 Da

IEP (calculated)

5.489

GRAVY (calculated)

-0.317

Length

777 amino acids

Sequence
(BLAST)

001: MGLIIFNGLT TVEAWAFWIL VTDHTQLTNS QFLPADIYLS NDDFSEASRL LHSPPSTIVR SSSTSPSFFR PFIFIRCCCY NAIELHRSKG ASKDCCVMCL
101: ARDSASAEHG AEFIEVLVIG SRKESIMDSC LDSPFPSLPL RFWSISRDSS GDPVLQQRLH HQDNGFKSMN PIELIQSPPK AFILVASAGY GSDLVEAINI
201: LSAVRSGGSL AVAVLLRPFS FEGRRRLEEV NELAKKLQQH TNFCIDIDIE ILLQKDLVTL DEALRNANNA VSKAVNAASA LISGMHGNFI DVMHKDLKEL
301: EGSEVTTILE SYKEAKVGFG AGHNLKTSIL QAIYDCPFFR PGVKDLKAII CIVASSVALQ KKDVKTILRT FRQTMEYTGD IIVSTVHEPD LEPKVLVTTF
401: FIQSSEEESS SKGNIFSGVL PFVLNIFKKY RSQLQKETSI GLGEAPVAME DSADSSTVKI SNQSVEGFEI DSEEVLEVSE SGDSEYLVRE EEPSRNSRLA
501: LGDENIEDYG AIQREPIANW SVDPGYQIEQ KRPADSGDTA VLSLGIVNLP VGVRPSKNSN SSLNVTSQPS RKAGSRDESF FNSNSSRKGS SDDTASTLLS
601: EKYADFTKQR NLSARAASML EAERDSSKRW SPIQEMQYRG GLFKGRCQGG LPEGKGRLVL GDGSIYDGMW HNGKRSGLGT FYFKNGDVFQ GTWREDLIHG
701: KGWFYFHKGD RWFANFWKGK ASGEGRFYSK SGEIFFGQFK DGWRDGHFLC IDVDGTRYSE TWDDGVLISR KQMDAGD

Best Arabidopsis Sequence Match ( AT1G75010.1 )
(BLAST)

001: MPISMELPVF STLRVPLFSR LALLPTFGVP FSSLGATTRL NCTSRKARRI CVMCLVRDSA PIETCERAGE DGSDEFIEVL VIGSRKESIM DSCLDSPFPS
101: LPLRFWSISK DSSGGLVLQQ RLNHQDNALK TMNPIELLQS RPRAFILVAS AGYGSDQVEA INILSAVRSG GNLAVAVLLK PFSFEGRKRL EEVNELARKL
201: QQHTNFCIDI DIEVLLQKDL VTLDEALRNA NNAVSMAINA ASALISGMHG NFIDVMHKDL KELEGSEVKT ILESYKEAKV GFGVGHNLKT SILRAIYDCP
301: FFRPGLKDLN AIICIVASSV PLQKKDVKTI LRTFRQTMEY TGDIIVSTVH EPDLEPKVRV TTFFILSSSE VETSNKGNIF SGLVPFVLNI FTRYRSQLQK
401: ETNIGLGETP VSIKDSADST DVKTSNQNIE EFEIDSEDLL EVSENGDDSE YPLKEGEPSR NSRLDLKDEN VEDFGAIQRE PIANWSMDQG YQIEQKWQAD
501: SGDTAVLSLG IVNLPVGVRP SKKLNSNLSV ASQLSRKADS REESFFNPNG STKDSSDTAS TLLSEKYADF TKQRNLSARA SSMLEAERDS SKRWSPILEM
601: QYRGGLFKGR CQGGLPEGKG RLVLGDGSIY DGMWHNGKRS GLGTFYFKNG DVFQGTWRED LIHGKGWFYF HKGDRWFANF WKGKASGEGR FYSKSGEIFF
701: GHFKDGWRHG QFLCIDLDGT RYSETWDDGV LIDRKQVDAG D

Arabidopsis Description

ARC3Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3 [Source:UniProtKB/Swiss-Prot;Acc:Q6F6B5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.