CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73132
CDX80403
CDX88064
CDX95938
CDY11108
CDY28547
CDY40918
CDY44064
CDY51505
CDY64472

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24020.1	CDX95938	AT1G69390.1	16014621
AT5G24020.1	CDY28547	AT1G69390.1	16014621
AT5G24020.1	CDY40918	AT1G69390.1	16014621
AT5G24020.1	CDY44064	AT1G69390.1	16014621
AT5G24020.1	CDY51505	AT1G69390.1	16014621
AT5G24020.1	CDX95938	AT1G69390.1	16146521
AT5G24020.1	CDY28547	AT1G69390.1	16146521
AT5G24020.1	CDY40918	AT1G69390.1	16146521
AT5G24020.1	CDY44064	AT1G69390.1	16146521
AT5G24020.1	CDY51505	AT1G69390.1	16146521
AT5G24020.1	CDX73132	AT1G75010.1	17304239
AT5G24020.1	CDY64472	AT1G75010.1	17304239
AT5G24020.1	CDX80403	AT5G24020.1	16014621
AT5G24020.1	CDX88064	AT5G24020.1	16014621
AT5G24020.1	CDY11108	AT5G24020.1	16014621
AT5G24020.1	CDX80403	AT5G24020.1	16146521
AT5G24020.1	CDX88064	AT5G24020.1	16146521
AT5G24020.1	CDY11108	AT5G24020.1	16146521

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009723.1-P	Field mustard	cytosol	53.21	100.0
CDX80403	Canola	plastid	97.25	96.95
AT5G24020.1	Thale cress	plastid	93.88	94.17
VIT_16s0050g01070.t01	Wine grape	plastid	83.79	82.28
PGSC0003DMT400026256	Potato	plastid	82.57	81.33
Solyc03g007980.1.1	Tomato	plastid	82.26	81.27
KRH08863	Soybean	plastid	80.12	80.86
GSMUA_Achr9P23510_001	Banana	plastid	69.72	78.08
CDY11108	Canola	mitochondrion	18.35	76.92
KRH48126	Soybean	extracellular	44.04	76.6
KRH38382	Soybean	cytosol	79.51	68.42
Os06t0106000-01	Rice	plastid	63.3	67.65
TraesCS4A01G474300.1	Wheat	plastid	64.53	67.41
TraesCS7D01G014700.1	Wheat	plastid	63.91	66.99
TraesCS7A01G017400.2	Wheat	mitochondrion, plastid	63.61	66.88
EER87699	Sorghum	plastid	63.61	66.67
Zm00001d035898_P001	Maize	plastid	63.91	66.35
HORVU7Hr1G001800.1	Barley	plastid	64.22	62.31
KRG89709	Soybean	plastid	21.1	48.25

Protein Annotations

MapMan:13.6.1.2.1	Gene3D:3.40.50.300	GO:A0A078DHZ6	EnsemblPlants:CDX88064	ProteinID:CDX88064	ProteinID:CDX88064.1
InterPro:CobQ/CobB/MinD/ParA_Nub-bd_dom	GO:GO:0000918	GO:GO:0003674	GO:GO:0003824	GO:GO:0007049	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016887	EnsemblPlantsGene:GSBRNA2T00147480001	InterPro:MinD_bac-type
InterPro:P-loop_NTPase	PFAM:PF01656	PANTHER:PTHR43384	PANTHER:PTHR43384:SF6	SUPFAM:SSF52540	TIGRFAMs:TIGR01968
UniParc:UPI0004EE9ED3	SEG:seg	:	:	:	:

Description

BnaA06g26550D

Coordinates

chrLK031854:+:381147..382424

Molecular Weight (calculated)

35675.4 Da

IEP (calculated)

8.320

GRAVY (calculated)

-0.003

Length

327 amino acids

Sequence
(BLAST)

001: MASLRVFSTT SHQPPLLPSS LSSKPLSTSS RFVTSPSRRR PIQSVLQFNR KPQLAGETPR IVVITSGKGG VGKTTTTANV GLSLARYGFS VVAIDADLGL
101: RNLDLLLGLE NRVNYTVVEV LNGDCRLDQA LVRDKRWSNF ELLCISKPRS KLPMGFGGKA LEWLVDALKT RPEGSPDFII IDCPAGIDAG FITAITPANE
201: AVLVTTPDIT ALRDADRVTG LLECDGIRDI KMIVNRVRTD MIRGEDMMSV LDVQEMLGLS LLGAIPEDSE VIRSTNRGFP LVLNKPPTLA GLAFEQAAWR
301: LVEQDSMKAV MVEEEPKKRG FFSFFGG

Best Arabidopsis Sequence Match ( AT5G24020.1 )
(BLAST)

001: MASLRLFSTN HQSLLLPSSL SQKTLISSPR FVNNPSRRSP IRSVLQFNRK PELAGETPRI VVITSGKGGV GKTTTTANVG LSLARYGFSV VAIDADLGLR
101: NLDLLLGLEN RVNYTCVEVI NGDCRLDQAL VRDKRWSNFE LLCISKPRSK LPMGFGGKAL EWLVDALKTR PEGSPDFIII DCPAGIDAGF ITAITPANEA
201: VLVTTPDITA LRDADRVTGL LECDGIRDIK MIVNRVRTDM IKGEDMMSVL DVQEMLGLSL LGVIPEDSEV IRSTNRGFPL VLNKPPTLAG LAFEQAAWRL
301: VEQDSMKAVM VEEEPKKRGF FSFFGG

Arabidopsis Description

MIND1Putative septum site-determining protein minD homolog, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9MBA2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.