CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89709
KRH08863
KRH36043
KRH38382
KRH48126
KRH70831
KRH74964

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24020.1	KRH70831	AT1G69390.1	16014621
AT5G24020.1	KRH74964	AT1G69390.1	16014621
AT5G24020.1	KRH70831	AT1G69390.1	16146521
AT5G24020.1	KRH74964	AT1G69390.1	16146521
AT5G24020.1	KRH36043	AT1G75010.1	17304239
AT5G24020.1	KRG89709	AT5G24020.1	16014621
AT5G24020.1	KRH08863	AT5G24020.1	16014621
AT5G24020.1	KRH38382	AT5G24020.1	16014621
AT5G24020.1	KRH48126	AT5G24020.1	16014621
AT5G24020.1	KRG89709	AT5G24020.1	16146521
AT5G24020.1	KRH08863	AT5G24020.1	16146521
AT5G24020.1	KRH38382	AT5G24020.1	16146521
AT5G24020.1	KRH48126	AT5G24020.1	16146521

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009723.1-P	Field mustard	cytosol	48.46	90.23
KRH48126	Soybean	extracellular	48.15	82.98
VIT_16s0050g01070.t01	Wine grape	plastid	84.88	82.58
AT5G24020.1	Thale cress	plastid	80.86	80.37
CDX88064	Canola	plastid	80.86	80.12
KRH38382	Soybean	cytosol	93.83	80.0
Solyc03g007980.1.1	Tomato	plastid	81.17	79.46
CDX80403	Canola	plastid	80.25	79.27
PGSC0003DMT400026256	Potato	plastid	81.17	79.22
GSMUA_Achr9P23510_001	Banana	plastid	69.14	76.71
CDY11108	Canola	mitochondrion	17.28	71.79
Os06t0106000-01	Rice	plastid	64.81	68.63
TraesCS7D01G014700.1	Wheat	plastid	65.74	68.27
TraesCS7A01G017400.2	Wheat	mitochondrion, plastid	65.43	68.17
TraesCS4A01G474300.1	Wheat	plastid	65.74	68.05
EER87699	Sorghum	plastid	64.51	66.99
KRG89709	Soybean	plastid	29.32	66.43
Zm00001d035898_P001	Maize	plastid	64.51	66.35
HORVU7Hr1G001800.1	Barley	plastid	65.12	62.61

Protein Annotations

EntrezGene:100803741	MapMan:13.6.1.2.1	Gene3D:3.40.50.300	UniProt:A0A0R0G2V0	EMBL:ACUP02010212	InterPro:CobQ/CobB/MinD/ParA_Nub-bd_dom
EnsemblPlantsGene:GLYMA_16G179200	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0016787	GO:GO:0016887	EnsemblPlants:KRH08863	ProteinID:KRH08863	ProteinID:KRH08863.1	InterPro:MinD_bac-type
InterPro:P-loop_NTPase	PFAM:PF01656	PANTHER:PTHR43384	PANTHER:PTHR43384:SF6	SUPFAM:SSF52540	TIGRFAMs:TIGR01968
UniParc:UPI000233E641	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr16:-:33985333..33987059

Molecular Weight (calculated)

35068.9 Da

IEP (calculated)

8.210

GRAVY (calculated)

0.070

Length

324 amino acids

Sequence
(BLAST)

001: MSSLHLLPGA TTAPNSAFLL RPHSPLFPSK TLTPKKPKPP SALLQWNRKP ELSGSTPRVA VITSGKGGVG KTTTTANIGL SLARLGFSVV AIDADVGLRN
101: LDLLLGLENR VNYTVIEVLN GECRLDQALV RDKRWSNFEL LCISKPRSKL PLGFGGKALT WLVDALKARS QGCPDFILID CPAGIDAGFI TAITPANEAV
201: LITTPDITSL RDADRVTGLL ECDGIRDIKM IVNRVRTDMI KGEDMMSVLD VQEMLGLPLL GVIPEDSEVI RSTNRGFPLV LNKPPTLAGL AFEQAAWRLV
301: EQDSMQAVVV EEQPKRGFFS FFGG

Best Arabidopsis Sequence Match ( AT5G24020.1 )
(BLAST)

001: MASLRLFSTN HQSLLLPSSL SQKTLISSPR FVNNPSRRSP IRSVLQFNRK PELAGETPRI VVITSGKGGV GKTTTTANVG LSLARYGFSV VAIDADLGLR
101: NLDLLLGLEN RVNYTCVEVI NGDCRLDQAL VRDKRWSNFE LLCISKPRSK LPMGFGGKAL EWLVDALKTR PEGSPDFIII DCPAGIDAGF ITAITPANEA
201: VLVTTPDITA LRDADRVTGL LECDGIRDIK MIVNRVRTDM IKGEDMMSVL DVQEMLGLSL LGVIPEDSEV IRSTNRGFPL VLNKPPTLAG LAFEQAAWRL
301: VEQDSMKAVM VEEEPKKRGF FSFFGG

Arabidopsis Description

MIND1Putative septum site-determining protein minD homolog, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9MBA2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.